rs238266373 SNP Detail

Summary

• ID
  rs238266373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCACTG CTTCTGAAGG
  CTATGAGCTT TGAGGTCCTT GTGGTGAGAG AGGTCCTTGA TGGCTGCACA GGGCATTCAG
  TGTACCTGCT GGGCACTAGG GTCCTGAGGA CACAGGGGAC CCTCATCCTT TCTTTCAGGA
  TGAGGGTCTA GTCTCAGAGT CCCGTAAGTT CTACTTTGAC GGGAGGCCAC GGAGAACTAT
  Y
  GGTTCCCAAA GTGGGGGACA GAATAGACAT GGCTCTGACT GTGACACTGG AACCTGAGGA
  GACATGGAGG GATGGATGTA GGTATCTTGG AAGCCTGACC TCGCCTGGCC CAGGCTTGGA
  TAACCTGTGA CCAAAACGTC TTGGCTCTGT ACTGCCGACA GAGGTCCTTT CAGCCCCCAA
  CCCAGGCCCC CTGCCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704303	CHEV_5_139828211	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238266373					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338012 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	360 bp upstream
Tssr49499	transcription start site region 49499	350 bp upstream
Tssr49500	transcription start site region 49500	1952 bp upstream
Tssr49501	transcription start site region 49501	1984 bp upstream