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rs238272048 SNP Detail
Summary
  • ID
    rs238272048
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93351965 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAGGCAGG AGCAGAGGCT
TCGCCAGGAG CTGGGGGAGC GTCAGCTCCG GGAGCAGGAG GAGCAGCGCC GCGACCTCCA
ACAGGAGCGT CCCGCTGAGG AGGCGCGCCA GCGCAACCAG TGGGAGAGGC CGCAGCGGGC
GGAGGAGCGC CTGGAGCAGG AGCAGCGGTT CCGCGACAGG GAGGAGCAGC GCTTCCGGGA
K
GAGAAGCTGC AACGAGCAGA GCTCCAGGAC AGCCTCCTAG ATGAAGAACA GAGGCGACTC
CAGGAGGAAC GCCGAGAGCC AAACAGGAGC CGGCAACTGA GGGAAGAAAG CCAGAGGCGC
CGCACACTGT ACGCCAAACC CAGCCAGAGG CAGCGTAGGG AGGAGGAGCT ACGCGAGGAA
CGGCTGTTGC AAGAAGAGCA                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876329 MGP_WTSI_3_93248580 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238272048 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876329 MGP_WTSI_3_93248580 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351965 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1228 bp downstream
Tssr961 transcription start site region 961 652 bp downstream
Tssr962 transcription start site region 962 465 bp upstream
Tssr963 transcription start site region 963 502 bp upstream
Tssr964 transcription start site region 964 598 bp upstream
Tssr30347 transcription start site region 30347 1185 bp downstream
Tssr30348 transcription start site region 30348 1165 bp downstream
Tssr30349 transcription start site region 30349 1153 bp downstream
Tssr30350 transcription start site region 30350 1109 bp downstream
Tssr30351 transcription start site region 30351 1085 bp downstream
Tssr30352 transcription start site region 30352 1035 bp downstream
Tssr30353 transcription start site region 30353 1016 bp downstream
Tssr30354 transcription start site region 30354 1001 bp downstream
Tssr30355 transcription start site region 30355 982 bp downstream
Tssr30356 transcription start site region 30356 928 bp downstream
Tssr30357 transcription start site region 30357 873 bp downstream
Tssr30358 transcription start site region 30358 755 bp downstream
Tssr30359 transcription start site region 30359 729 bp downstream
Tssr30360 transcription start site region 30360 699 bp downstream
Tssr30361 transcription start site region 30361 374 bp downstream
Tssr30362 transcription start site region 30362 358 bp downstream
Tssr30363 transcription start site region 30363 216 bp downstream
Tssr30364 transcription start site region 30364 144 bp downstream
Tssr30365 transcription start site region 30365 109 bp downstream
Tssr30366 transcription start site region 30366 56 bp downstream
Tssr30367 transcription start site region 30367 17 bp downstream
Tssr30368 transcription start site region 30368 within coordinates
Tssr30369 transcription start site region 30369 8 bp upstream
Tssr30370 transcription start site region 30370 15 bp upstream
Tssr30371 transcription start site region 30371 35 bp upstream
Tssr30372 transcription start site region 30372 48 bp upstream
Tssr30373 transcription start site region 30373 99 bp upstream
Tssr30374 transcription start site region 30374 117 bp upstream
Tssr30375 transcription start site region 30375 130 bp upstream
Tssr30376 transcription start site region 30376 156 bp upstream
Tssr30377 transcription start site region 30377 178 bp upstream
Tssr30378 transcription start site region 30378 211 bp upstream
Tssr30379 transcription start site region 30379 229 bp upstream
Tssr30380 transcription start site region 30380 309 bp upstream
Tssr30381 transcription start site region 30381 327 bp upstream
Tssr30382 transcription start site region 30382 386 bp upstream
Tssr30383 transcription start site region 30383 397 bp upstream
Tssr30384 transcription start site region 30384 406 bp upstream
Tssr30385 transcription start site region 30385 422 bp upstream
Tssr30386 transcription start site region 30386 443 bp upstream
Tssr30387 transcription start site region 30387 534 bp upstream
Tssr30388 transcription start site region 30388 560 bp upstream
Tssr30389 transcription start site region 30389 574 bp upstream
Tssr30390 transcription start site region 30390 646 bp upstream
Tssr30391 transcription start site region 30391 665 bp upstream
Tssr30392 transcription start site region 30392 683 bp upstream
Tssr30393 transcription start site region 30393 700 bp upstream
Tssr30394 transcription start site region 30394 720 bp upstream
Tssr30395 transcription start site region 30395 745 bp upstream
Tssr30396 transcription start site region 30396 794 bp upstream
Tssr30397 transcription start site region 30397 811 bp upstream
Tssr30398 transcription start site region 30398 886 bp upstream
Tssr30399 transcription start site region 30399 933 bp upstream
Tssr30400 transcription start site region 30400 1418 bp upstream
Tssr30401 transcription start site region 30401 1438 bp upstream
Tssr30402 transcription start site region 30402 1537 bp upstream
Tssr30403 transcription start site region 30403 1577 bp upstream
Tssr34352 transcription start site region 34352 774 bp upstream
Tssr34353 transcription start site region 34353 768 bp upstream
Tssr34354 transcription start site region 34354 717 bp upstream
Tssr34355 transcription start site region 34355 620 bp upstream
Tssr34356 transcription start site region 34356 47 bp downstream
Tssr34357 transcription start site region 34357 92 bp downstream
Tssr34358 transcription start site region 34358 144 bp downstream
Tssr34359 transcription start site region 34359 213 bp downstream
Tssr34360 transcription start site region 34360 294 bp downstream
Tssr34361 transcription start site region 34361 315 bp downstream
Tssr34362 transcription start site region 34362 364 bp downstream
Tssr34363 transcription start site region 34363 391 bp downstream
Tssr34364 transcription start site region 34364 408 bp downstream
Tssr34365 transcription start site region 34365 422 bp downstream
Tssr34366 transcription start site region 34366 482 bp downstream
Tssr34367 transcription start site region 34367 615 bp downstream
Tssr34368 transcription start site region 34368 694 bp downstream
Tssr34369 transcription start site region 34369 719 bp downstream
Tssr34370 transcription start site region 34370 733 bp downstream
Tssr34371 transcription start site region 34371 787 bp downstream
Tssr34372 transcription start site region 34372 1550 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory