rs238272963 SNP Detail

Summary

• ID
  rs238272963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7461469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTTCCT TTGTGTCCGA
  CAAGATCTGG TAGAAACCAG GGTAACTATC AGTGCACATC TTGGGCAAGG TAGCTGATCA
  GTGATAACAC TCACGTGCCT ATACTTACAT CCAGTCAGGG CCCATGTCGC TGTGTTGGGG
  TGACTATTAT GTGTTGGAGT GTGCCTGAAC AGCTCTGCCT AGTAGTGAGC ATAAAGTCCC
  Y
  GTGTGATCAC CCCTATGCTT GTCTGCCTAC ATGAGCCATC AATCAGAGCC ACAGTGACAT
  CATACCTTAG TGATCTCTTC CTTCTGCTTC CGGATGTTGC CCACAATCTC CAGGATGCGC
  TGAGTATAGG CCAGCCGGGA CACATCTTTT GGCAGAGTCT CCAGCTCTGA CACCTAGGTG
  GGAACATGGC AGGCGTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888038	CHEV_X_7172356	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238272963					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7461469 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	within coordinates
Foxp3	forkhead box P3	within coordinates
Gm36995	predicted gene, 36995	within coordinates
Tssr160391	transcription start site region 160391	1994 bp downstream
Tssr160392	transcription start site region 160392	1978 bp downstream
Tssr160393	transcription start site region 160393	1770 bp downstream
Tssr160394	transcription start site region 160394	1719 bp downstream
Tssr162800	transcription start site region 162800	166 bp upstream
Tssr162801	transcription start site region 162801	11 bp upstream
Tssr162802	transcription start site region 162802	212 bp downstream