rs238276805 SNP Detail

Summary

• ID
  rs238276805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8106536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCGAGA GGGAGAATGG
  GTCCTGATAT AAACTCGTCT GGGGTCCTGG GTCATCGCCC GAGTGTGGGT CGCAGACGGC
  GCTGACACAG CACAGAGGCA GCAGGGAACG GGCGGCACTC GGGATGCCGC GGGGCGATCG
  GGGTGGGTGG CGGCGAGCGG CGGCCCCCGC GGGGCGGCGT GGTGCGCTCC GGGGCGGCTC
  Y
  GGGCCGGACG GGCGGAGCAG CAGACAGGCA GGGCGGAGGC GCAGTCTGCA CCATGGCGTA
  TCCCGGGCAC CCTGGCGCGG GCGGAGGGTA CTACCCAGGC GGGGTAAGTG CAGCGGACGA
  GGGCACAGCA GCCTCTGGTC TCCCGAGACT GGAAGGCGCC ACGGACGAGC GGGAGGAGGC
  GTCGCGGGCG GTCCCAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321459853	CHEV_5_8056536	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238276805					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8106536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	within coordinates
Gm15730	predicted gene 15730	983 bp downstream
Rr607089	regulatory region 607089	within coordinates
Rr607090	regulatory region 607090	165 bp proximal
Rr607091	regulatory region 607091	1517 bp proximal
Sri	sorcin	within coordinates
Tssr45106	transcription start site region 45106	1422 bp downstream
Tssr45107	transcription start site region 45107	within coordinates
Tssr45108	transcription start site region 45108	19 bp upstream