rs238277682 SNP Detail

Summary

• ID
  rs238277682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122700736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT CGAGTGAAAA GCTAGAGTTT
  Y
  CTAGGGTCCC AGGTCTCTCC CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324858488	CHEV_14_122862546	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238277682					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122700736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6894	CpG island 6894	within coordinates
Gm56762	predicted gene, 56762	222 bp upstream
Tssr127333	transcription start site region 127333	823 bp upstream
Tssr127334	transcription start site region 127334	1632 bp upstream
Tssr130332	transcription start site region 130332	1702 bp upstream
Tssr130333	transcription start site region 130333	839 bp downstream
Tssr130334	transcription start site region 130334	889 bp downstream
Tssr130335	transcription start site region 130335	902 bp downstream
Tssr130336	transcription start site region 130336	1495 bp downstream
Zic5	zinc finger protein of the cerebellum 5	within coordinates