rs238278345 SNP Detail

Summary

• ID
  rs238278345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141933752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG TGGGCATTTG AAGGTTACCC
  Y
  TGCTAGACAT GCAAGTAAGT CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471177	CHEV_7_149565920	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238278345					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141933752 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	1160 bp upstream
Rr658151	regulatory region 658151	1240 bp proximal
Tssr70137	transcription start site region 70137	768 bp upstream
Tssr70138	transcription start site region 70138	816 bp upstream
Tssr70139	transcription start site region 70139	835 bp upstream
Tssr70140	transcription start site region 70140	865 bp upstream
Tssr70141	transcription start site region 70141	878 bp upstream
Tssr70142	transcription start site region 70142	914 bp upstream
Tssr75774	transcription start site region 75774	775 bp downstream
Tssr75775	transcription start site region 75775	796 bp downstream
Tssr75776	transcription start site region 75776	802 bp downstream
Tssr75777	transcription start site region 75777	835 bp downstream
Tssr75778	transcription start site region 75778	875 bp downstream
Tssr75779	transcription start site region 75779	911 bp downstream
Tssr75780	transcription start site region 75780	921 bp downstream
Tssr75781	transcription start site region 75781	943 bp downstream
Tssr75782	transcription start site region 75782	967 bp downstream