rs238281082 SNP Detail

Summary

• ID
  rs238281082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31769151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACGGGTA CTAAAGATGC
  TTTGATCTCT CGATGTCGGT TCTAATTTCA GAATCTGGTA ATCGTGGCCT GACTTGTTTT
  GCAGGTGGAA ATGAGTTCCC AGCAGTTTCC TCGGTTAGGA ACCCCTTCCC CTGGGCTTAG
  CCAGCCACCT TCACAGATTG CAAGCAGTGG TTCCGCAGGA CTGATAAACC AAGTTGCCAC
  R
  GGTAAGATAA GTCACAGCTC TTTTGTATTG CTTACTGTTT GAAGAATGTC ACTATCTTCA
  AATTAGCAAA CTCCTTTTCA TAATTACTGT CTTATCGACT TTGAGGAAAG GATGTGTCAA
  TACACTTAAA ATAAGGCATT TCCCTCTCTT TTTTAAAAAA TCATTTATGT ATGCTAGGCT
  AAGTGCAACT TTAGTAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400176114	MGP_WTSI_18_31795752	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238281082					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400176114	MGP_WTSI_18_31795752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31769151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	643 bp distal
Gm58914	predicted gene, 58914	1114 bp upstream
Rr370349	regulatory region 370349	1481 bp downstream
Rr405571	regulatory region 405571	1654 bp downstream
Rr405572	regulatory region 405572	1000 bp downstream
Rr535278	regulatory region 535278	1908 bp distal
Rr535279	regulatory region 535279	1705 bp distal
Rr535280	regulatory region 535280	1125 bp distal
Rr535281	regulatory region 535281	1617 bp distal
Rr535282	regulatory region 535282	624 bp distal
Sap130	Sin3A associated protein	within coordinates
Tssr150348	transcription start site region 150348	1735 bp downstream
Tssr150349	transcription start site region 150349	1727 bp downstream
Tssr150350	transcription start site region 150350	1708 bp downstream
Tssr150351	transcription start site region 150351	960 bp downstream
Tssr152716	transcription start site region 152716	1287 bp upstream