rs238284151 SNP Detail

Summary

• ID
  rs238284151
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177809908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACACACA AACACACACA
  CAATTGATAA ATCTAAAATG TAAAATAGAT ATTCAATCTT AGTTAACTGA AAACTCAGGA
  TGTCTTCTGA CCAGTTAACT GTCTGTCCAC AGATCACCTC TTTGCTCATT ATGTTCTAGC
  CACAGAGAAC TTTTATTTTG TTCCTTAAAT ACAGAAAACA TGTCTTATGT CTATGTACTT
  W
  TGTCTCCTCT AATTGGAATT CTTGGCTTTC TTATTTTTGA CTAGCTTTCT GTCATTCAGA
  TTCTAGCTTA AAACTAGTCA TTGCCCACAC ATCCTAAGAT AACTCTAAAT TATCTCAATT
  TTTCTACAAA ATACTCATTG CTGGAATTTT GTTTGTCTCC CGTGTCTGTT CAGTTGCTGA
  ATTCCCAGGT CTACCATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss352531609	MGP_WTSI_1_179912473	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs238284151					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352531609	MGP_WTSI_1_179912473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177809908 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	1081 bp upstream
Cpgi1085	CpG island 1085	746 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	651 bp distal
Rr29061	regulatory region 29061	492 bp proximal
Rr396636	regulatory region 396636	702 bp upstream
Tssr10371	transcription start site region 10371	1085 bp upstream
Tssr10372	transcription start site region 10372	1124 bp upstream