rs238285041 SNP Detail

Summary

• ID
  rs238285041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36818996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGGGC ACAGAGAAGG
  CCGACAAAGA TGAGATGATG CGAGAGGCCC AGATCATGCA CCAGCTCGAC AACCCCTACA
  TCGTGCGGCT CATCGGCGTG TGCCAGGCAG AAGCACTCAT GCTGGTCATG GAGATGGCGG
  GAGGCGGGCC CCTGCACAAG TTCCTGCTGG GAAAGAAGTG AGCCTGGGGG ACACTCACGG
  R
  GTGGGGGAGT AGGGATGGGG GTGGGGGTGG GGGGAGAAAT AGAGGAACAC ACACAAAGAG
  AGAGAGAGAG AGAGAGGGAG AGAGAGAGAG AGAGAGGCAG ACAGAGAGGC AGACAGACAC
  ACGCACAGAG ACACAGACAG ACGCACACAC AGAGACACAC AGAGAAAGAG AAACAGAGAG
  ACACACAGAT ACACAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349258627	MGP_WTSI_1_36836760	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238285041					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349258627	MGP_WTSI_1_36836760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36818996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi155	CpG island 155	615 bp distal
Tssr42	transcription start site region 42	105 bp upstream
Tssr6286	transcription start site region 6286	31 bp upstream
Tssr6287	transcription start site region 6287	198 bp upstream
Tssr6288	transcription start site region 6288	1180 bp upstream
Zap70	zeta-chain (TCR) associated protein kinase	within coordinates