rs238285447 SNP Detail

Summary

• ID
  rs238285447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45570401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCCCCCC TCCCTCCAAC
  ACCAGGGAAA TGCCAGCCTC TGGCTGAGTC TCTGGTCCTC ACCCGACCTG ACTGCAGACC
  CCGGCTCTAG ACACTCAGGG AGGTGGATTT GCAGCAGGGA GGGTGTGGTC TGAGTGGAGA
  GACCACCTCC TACCACCCTT CAGTGTCCAG AGAACTCAGC CAGCCCTGGG AGCCCTCCTG
  Y
  ACCCCTTCAT CTAAGAAGGG AGTGGAAGAC CCCAGGGAGA AGCCACAGGA CATTCTTCAT
  GGTGGGCTCT GTTGGGACAA GTCTCATAGA CAGCTCTAAG CTCTCCTGTA TTCCCACTAC
  AAAGGCTGAG AGATCAGTTC TTCAATTACC AGTCTCCTCT GGAGCTAAGA GTGGAGGGTC
  TCTTCCTGCC TAAGGTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187845	MGP_WTSI_7_53176347	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238285447					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187845	MGP_WTSI_7_53176347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45570401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1989 bp proximal
Emp3	epithelial membrane protein 3	Intron
Gm45442	predicted gene 45442	1163 bp downstream
Rr368318	regulatory region 368318	1779 bp upstream
Rr368319	regulatory region 368319	1999 bp upstream
Rr400324	regulatory region 400324	213 bp upstream
Rr646608	regulatory region 646608	1502 bp distal
Rr646609	regulatory region 646609	within coordinates
Rr646610	regulatory region 646610	1074 bp proximal
Tssr2257	transcription start site region 2257	1863 bp downstream
Tssr72489	transcription start site region 72489	1618 bp upstream
Tssr72490	transcription start site region 72490	784 bp upstream
Tssr72491	transcription start site region 72491	556 bp upstream
Tssr72492	transcription start site region 72492	341 bp upstream
Tssr72493	transcription start site region 72493	309 bp upstream
Tssr72494	transcription start site region 72494	299 bp upstream
Tssr72495	transcription start site region 72495	283 bp upstream
Tssr72496	transcription start site region 72496	197 bp upstream
Tssr72497	transcription start site region 72497	94 bp upstream
Tssr72498	transcription start site region 72498	134 bp downstream
Tssr72499	transcription start site region 72499	284 bp downstream
Tssr72500	transcription start site region 72500	441 bp downstream