rs238287085 SNP Detail

Summary

• ID
  rs238287085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86287499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCCAGG CGGACGTTGA
  CTGGTCAGTG TGCGGGTCCT TTGAATGCTC CTGAGCGCCG GGCTCTCCCC ACGCCTGCGC
  AGTGGGACGG GCGAGTTTGG CGCGGCTTGT GTGTGAGGCG CGGGTAGGTG GCGGCGTGGC
  CCGGATTCCC TCAGGTGTTC CGAGGCAGCA TGGGCGGCGA TGCTCAGGTG GTCTGGGCGT
  Y
  TCTCGGTGCT TTCCCCCGCG CCGCGTGGTC CTGCTGAAGA ACGCCGGAAG GCCTAGGGTT
  CCCTCGGGCT GATGAGCGGG CCTCGGCCTG TTCTCCGCGG AGTCGCGAAC GGCTTCTTGG
  CTATGATGCG AGTCCCCGCT TTCCTGAGAG CTCCTAATAA AAGCAGTTGT GCGTGTGTGT
  GTGTACGAGC AGTGCACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350367767	MGP_WTSI_1_88256352	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238287085					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367767	MGP_WTSI_1_88256352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86287499 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Cpgi503	CpG island 503	within coordinates
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	1669 bp distal
Gm71192	predicted gene, 71192	within coordinates
Ncl	nucleolin	377 bp upstream
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	161 bp downstream
Tssr7749	transcription start site region 7749	187 bp downstream
Tssr7750	transcription start site region 7750	85 bp downstream
Tssr12786	transcription start site region 12786	1545 bp upstream
Tssr12787	transcription start site region 12787	1296 bp upstream
Tssr12788	transcription start site region 12788	780 bp upstream
Tssr12789	transcription start site region 12789	731 bp upstream
Tssr12790	transcription start site region 12790	396 bp upstream
Tssr12791	transcription start site region 12791	291 bp upstream
Tssr12792	transcription start site region 12792	174 bp downstream