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rs238287323 SNP Detail
Summary
  • ID
    rs238287323
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130597 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTCTCTCTC CTCTCTTTCC
CCTTCACCCT CTACCTCCTC CTCTGTCTTT CCTTGTCCTT TGGTTTCCTC TACAGTGTCT
CATCCAATAT CTCCTGCTGT TCTTCCTTCT CTCTGGCATT TACACTGTTT CTGCTTCTGT
TTCTCCTAAT TATTTCTACT CCGTCTCCTC TATCCCTCCT CTCCTTTAAC TGCTCTATCC
Y
CTCCCTTCCC TTTCACCCCT CCTTCTCTGT CTCCTCTATT CCTCCCTTTT TGCTTTCACC
TTCATCACCT TCATAATCCC CTCTTCTCCT TGAGCCCCTC TATTGCCTCC TCTTCTGCTC
CCCCTCCTTC ATCTTTTTTA TCCTTTCTCT TCTTCCTCTC ATTTATTTCA ACTATCCCCC
TCTTGCTTCT GTCTGATTCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156155 MGP_WTSI_7_51736543 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238287323 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156155 MGP_WTSI_7_51736543 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130597 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1411 bp proximal
Tssr2228 transcription start site region 2228 1090 bp downstream
Tssr2229 transcription start site region 2229 815 bp downstream
Tssr2230 transcription start site region 2230 632 bp downstream
Tssr2231 transcription start site region 2231 505 bp downstream
Tssr2232 transcription start site region 2232 331 bp downstream
Tssr2233 transcription start site region 2233 286 bp downstream
Tssr2234 transcription start site region 2234 138 bp downstream
Tssr2235 transcription start site region 2235 494 bp upstream
Tssr66295 transcription start site region 66295 1938 bp downstream
Tssr66296 transcription start site region 66296 1767 bp downstream
Tssr66297 transcription start site region 66297 1743 bp downstream
Tssr66298 transcription start site region 66298 1688 bp downstream
Tssr66299 transcription start site region 66299 1668 bp downstream
Tssr66300 transcription start site region 66300 1645 bp downstream
Tssr66301 transcription start site region 66301 1629 bp downstream
Tssr66302 transcription start site region 66302 1588 bp downstream
Tssr66303 transcription start site region 66303 1579 bp downstream
Tssr66304 transcription start site region 66304 1574 bp downstream
Tssr66305 transcription start site region 66305 1535 bp downstream
Tssr66306 transcription start site region 66306 1481 bp downstream
Tssr66307 transcription start site region 66307 1432 bp downstream
Tssr66308 transcription start site region 66308 1415 bp downstream
Tssr66309 transcription start site region 66309 1365 bp downstream
Tssr66310 transcription start site region 66310 1296 bp downstream
Tssr66311 transcription start site region 66311 1273 bp downstream
Tssr66312 transcription start site region 66312 1254 bp downstream
Tssr66313 transcription start site region 66313 1244 bp downstream
Tssr66314 transcription start site region 66314 1226 bp downstream
Tssr66315 transcription start site region 66315 1219 bp downstream
Tssr66316 transcription start site region 66316 1154 bp downstream
Tssr66317 transcription start site region 66317 1138 bp downstream
Tssr66318 transcription start site region 66318 1097 bp downstream
Tssr66319 transcription start site region 66319 1069 bp downstream
Tssr66320 transcription start site region 66320 1045 bp downstream
Tssr66321 transcription start site region 66321 1021 bp downstream
Tssr66322 transcription start site region 66322 1005 bp downstream
Tssr66323 transcription start site region 66323 967 bp downstream
Tssr66324 transcription start site region 66324 914 bp downstream
Tssr66325 transcription start site region 66325 873 bp downstream
Tssr66326 transcription start site region 66326 863 bp downstream
Tssr66327 transcription start site region 66327 843 bp downstream
Tssr66328 transcription start site region 66328 825 bp downstream
Tssr66329 transcription start site region 66329 786 bp downstream
Tssr66330 transcription start site region 66330 773 bp downstream
Tssr66331 transcription start site region 66331 759 bp downstream
Tssr66332 transcription start site region 66332 726 bp downstream
Tssr66333 transcription start site region 66333 691 bp downstream
Tssr66334 transcription start site region 66334 685 bp downstream
Tssr66335 transcription start site region 66335 674 bp downstream
Tssr66336 transcription start site region 66336 660 bp downstream
Tssr66337 transcription start site region 66337 644 bp downstream
Tssr66338 transcription start site region 66338 560 bp downstream
Tssr66339 transcription start site region 66339 528 bp downstream
Tssr66340 transcription start site region 66340 461 bp downstream
Tssr66341 transcription start site region 66341 412 bp downstream
Tssr66342 transcription start site region 66342 383 bp downstream
Tssr66343 transcription start site region 66343 357 bp downstream
Tssr66344 transcription start site region 66344 200 bp downstream
Tssr66345 transcription start site region 66345 163 bp downstream
Tssr66346 transcription start site region 66346 91 bp downstream
Tssr66347 transcription start site region 66347 73 bp downstream
Tssr66348 transcription start site region 66348 28 bp downstream
Tssr66349 transcription start site region 66349 within coordinates
Tssr66350 transcription start site region 66350 3 bp upstream
Tssr66351 transcription start site region 66351 11 bp upstream
Tssr66352 transcription start site region 66352 47 bp upstream
Tssr66353 transcription start site region 66353 121 bp upstream
Tssr66354 transcription start site region 66354 135 bp upstream
Tssr66355 transcription start site region 66355 162 bp upstream
Tssr66356 transcription start site region 66356 179 bp upstream
Tssr66357 transcription start site region 66357 193 bp upstream
Tssr66358 transcription start site region 66358 205 bp upstream
Tssr66359 transcription start site region 66359 231 bp upstream
Tssr66360 transcription start site region 66360 243 bp upstream
Tssr66361 transcription start site region 66361 269 bp upstream
Tssr66362 transcription start site region 66362 301 bp upstream
Tssr66363 transcription start site region 66363 318 bp upstream
Tssr66364 transcription start site region 66364 351 bp upstream
Tssr66365 transcription start site region 66365 371 bp upstream
Tssr66366 transcription start site region 66366 391 bp upstream
Tssr66367 transcription start site region 66367 419 bp upstream
Tssr66368 transcription start site region 66368 441 bp upstream
Tssr66369 transcription start site region 66369 475 bp upstream
Tssr66370 transcription start site region 66370 517 bp upstream
Tssr66371 transcription start site region 66371 942 bp upstream
Tssr66372 transcription start site region 66372 1105 bp upstream
Tssr66373 transcription start site region 66373 1395 bp upstream
Tssr66374 transcription start site region 66374 1453 bp upstream
Tssr66375 transcription start site region 66375 1464 bp upstream
Tssr66376 transcription start site region 66376 1477 bp upstream
Tssr66377 transcription start site region 66377 1516 bp upstream
Tssr66378 transcription start site region 66378 1538 bp upstream
Tssr66379 transcription start site region 66379 1550 bp upstream
Tssr66380 transcription start site region 66380 1583 bp upstream
Tssr66381 transcription start site region 66381 1602 bp upstream
Tssr66382 transcription start site region 66382 1626 bp upstream
Tssr66383 transcription start site region 66383 1736 bp upstream
Tssr66384 transcription start site region 66384 1834 bp upstream
Tssr72202 transcription start site region 72202 1365 bp upstream
Tssr72203 transcription start site region 72203 985 bp upstream
Tssr72204 transcription start site region 72204 385 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory