rs238288417 SNP Detail

Summary

• ID
  rs238288417
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108859615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATTTCCCA GTATAATTTT TGTCAGTTTG
  TCAGGGTCAA GATATCTTTA TAAACTAGGG ATAACTTTTC TTGCCAAAGA TGTAGTTGTA
  ACCTGTAAGT GAGCAAGTTG AAGGTAATAA CATTGCTTAG TTTTGGCCTC CCAGGTTAAA
  A
  TTTCAGTACA GGTGTTGGTG GTTTTTTTGT TTGTTTGTTT GTTGTTTTCC TGTCCATACA
  AAGTTACCTA ATAATGGCTA AGTCTCAGAT ACTGTTCTGA TTGCTTCAGG TAGAGATTCG
  TTGACCTTAT TTTTTGCTAG TTGTTTAACA                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321253470	CHEV_4_108675023	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238288417					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108859615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	1152 bp distal
Nrdc	nardilysin convertase	within coordinates
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	1727 bp downstream
Tssr38326	transcription start site region 38326	1712 bp downstream
Tssr38327	transcription start site region 38327	1554 bp downstream
Tssr38328	transcription start site region 38328	1509 bp downstream
Tssr38329	transcription start site region 38329	1493 bp downstream
Tssr38330	transcription start site region 38330	1417 bp downstream
Tssr38331	transcription start site region 38331	1353 bp downstream