rs238291032 SNP Detail

Summary

• ID
  rs238291032
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCACTAA TGATGAATTT
  ACTTGTTAGT TTAGCTCGAT GTTCTGTATA CTGAGGCAAT CTTATCCAGT CACTTTTAAT
  CTTGAGCTCA AAATGCTGTT TTCAGAGAAC CTGCAATGCT AGATATAAAA AACCCTTTCA
  AGTTTCTCAA ATAATAATCA ATCAGCTCAG TTACATTTTC CACTACAAAG GAGTATTGCT
  W
  CCTCTCAGAT TACCATAATC AATTTCTGTC AAGATAGACT GTATTAACAT GAATCTAATA
  ATGGTGATTC AAGCCCCATT GTAAGGTCTT TACAACACTA TGTCTCGGCT ATAGCTATCT
  TTCCTACAAT GTTAAAACAC GGTAAAGAAT GAAATTCTAG ATCTTTCTGA CACTTATTTG
  GCCCAATCTA AATCCACTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325520791	CHEV_18_6240352	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238291032					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	328 bp proximal
Gm41664	predicted gene, 41664	325 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	810 bp downstream
Tssr152354	transcription start site region 152354	884 bp downstream
Tssr152355	transcription start site region 152355	1117 bp downstream
Tssr152356	transcription start site region 152356	1132 bp downstream