rs238298849 SNP Detail

Summary

• ID
  rs238298849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18067521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAACCTGT ATGCATGTAT
  GCTTTCACAA AATTTCTGCT TCAGATACTA TTATTTATAT ATAAGCGTGG CATAAACTGT
  GCATCTTTCC TGTTTTTTTC TAAACACATT TTCCCTTTTT TTTTTTTGTA AATGTCAAAA
  CTTCATATAA ATGACAGTTT TGTTTTTGTC TTGAAAAGAG CAAGTGTTTA CCTACATTTA
  Y
  TAGGTGTTAC AGAATGAGGT AAGATTCTTA CCCTTTTTTT TCATACAAAT TAGTTCCATC
  TCAAGAACTA AGCTCCAATG TATTAAAAAT AAAATGAAAT GTATTTTTAA ATTATTTAGT
  GCATAGGCTT GACTTCAGTG TTTGGGAAGT TCCACATTGA TTTGCACCAA AATTAGTCTA
  TATTATGAGG CAAAACAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353244148	MGP_WTSI_2_17984337	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238298849					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353244148	MGP_WTSI_2_17984337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18067521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			within coordinates
Cpgi11235	CpG island 11235			1205 bp proximal
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr552295	regulatory region 552295			1436 bp proximal
Rr552296	regulatory region 552296			1745 bp proximal
Rr552297	regulatory region 552297			1875 bp proximal
Rr552298	regulatory region 552298			1988 bp proximal
Tssr16361	transcription start site region 16361			1181 bp upstream
Tssr16362	transcription start site region 16362			1609 bp upstream
Tssr16363	transcription start site region 16363			1630 bp upstream
Tssr16364	transcription start site region 16364			1646 bp upstream
Tssr16365	transcription start site region 16365			1706 bp upstream
Tssr16366	transcription start site region 16366			1854 bp upstream
Tssr16367	transcription start site region 16367			1935 bp upstream
Tssr16368	transcription start site region 16368			2000 bp upstream