rs238299491 SNP Detail

Summary

• ID
  rs238299491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6136793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCTTGA GCTAATAACT
  AGGTCTGTGC GGAGCTATTG TTGGCCTGAG CCTCGCGCAG AGCGCTGGAC GAGCAGTACA
  CAGGAGCGTA ACTGCACTTT GAATCCATAG GGCCTGCTGT GTGCAATCAC TGTGGGCCAC
  CCGGGTGCCA TTGTCCAAAG TCAATCCAGT TTACAGTGTG GCCGCGTAGA ACCCGGAAGT
  R
  GCCCGCAGTG AAATGTGTAG TGCTCCTGTG GTGAGAAACT GGAATGAGAA TCCACAAAGG
  TCTGGCGTAG TTCTACCATT AATTGCCTCT TCACTCTTTA CATCTCCACT ATCACATTGA
  CTGTTGACTT AAACCTTCAG GCTCTAAAAT CAAGAGACTG AAAAAAATAT TAGGAAATCA
  GAACTCATTC ATTAACCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399596447	MGP_WTSI_18_6136791	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238299491					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399596447	MGP_WTSI_18_6136791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6136793 () rs orientation: forward

Symbol	Name	Function Class
Arhgap12	Rho GTPase activating protein 12	691 bp upstream
Cpgi9676	CpG island 9676	within coordinates
Gm58680	predicted gene, 58680	within coordinates
Rr405549	regulatory region 405549	556 bp downstream
Rr533476	regulatory region 533476	916 bp distal
Rr533477	regulatory region 533477	567 bp distal
Rr533478	regulatory region 533478	within coordinates
Rr533479	regulatory region 533479	497 bp proximal
Tssr149959	transcription start site region 149959	366 bp downstream
Tssr152338	transcription start site region 152338	1563 bp upstream
Tssr152339	transcription start site region 152339	923 bp upstream
Tssr152340	transcription start site region 152340	794 bp upstream
Tssr152341	transcription start site region 152341	725 bp upstream