rs238303893 SNP Detail

Summary

• ID
  rs238303893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104194362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGTTATT ATCCAGACCG
  CGTGCCACTT TCACAGCTTG TCTGTAAGTT TTGGCTTTGG GGTTCGAAAG TGGGAAACCG
  AGGCCGGCTT TCCTTTTGGA CAAGAGGTTT ATCAGAGTCA CCAACACCAC GGACAGCACC
  GTGAAGGGGG CTCTGGGGAG CCCAGGCTGC GTTCCAGGGT TGGGGGATTC CCTCCTTAAG
  R
  GTTAGGGGTC ACGTGACTGG CCTGATCACG TGACCGGCGG GACGCCCACA TTTTGTTGTT
  CACAGGCGGT CTCTGAATCC GGTATGCGGG CAAGTTTCGA AAAGCAAGTT ACTTGGCTTC
  TGGAAACCAA ACCAAGGTGT TTCAAGACTC GTCACTGACT CATCCTACGT CTTCTCAAAC
  CTCGCATGGC TCACGTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366114217	MGP_WTSI_5_104475515	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238303893					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366114217	MGP_WTSI_5_104475515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104194362 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16142	CpG island 16142			within coordinates
Gm43545	predicted gene 43545			within coordinates
Mir5619	microRNA 5619			1507 bp upstream
Nudt9	nudix hydrolase 9			Intron
				mRNA-UTR
Rr399211	regulatory region 399211			within coordinates
Rr616018	regulatory region 616018			within coordinates
Rr616019	regulatory region 616019			384 bp proximal
Tssr47616	transcription start site region 47616			36 bp upstream
Tssr47617	transcription start site region 47617			292 bp upstream
Tssr47618	transcription start site region 47618			385 bp upstream
Tssr47619	transcription start site region 47619			411 bp upstream
Tssr47620	transcription start site region 47620			422 bp upstream
Tssr47621	transcription start site region 47621			484 bp upstream
Tssr47622	transcription start site region 47622			568 bp upstream