rs238305269 SNP Detail

Summary

• ID
  rs238305269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152778374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC GGCCCCGCGG GTGCTGGCGG
  Y
  CGCCGCCATC TTCCTCTCCT CCGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068821	CHEV_1_154749753	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238305269					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152778374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	862 bp distal
Gm70930	predicted gene, 70930	1434 bp upstream
Rr396386	regulatory region 396386	within coordinates
Rr396387	regulatory region 396387	509 bp upstream
Rr396388	regulatory region 396388	1910 bp upstream
Rr420557	regulatory region 420557	12 bp distal
Rr420558	regulatory region 420558	within coordinates
Rr420559	regulatory region 420559	944 bp proximal
Rr420560	regulatory region 420560	1445 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	within coordinates
Tssr9437	transcription start site region 9437	221 bp upstream
Tssr9438	transcription start site region 9438	274 bp upstream
Tssr9439	transcription start site region 9439	1180 bp upstream
Tssr14242	transcription start site region 14242	5 bp downstream
Tssr14243	transcription start site region 14243	113 bp downstream
Tssr14244	transcription start site region 14244	134 bp downstream
Tssr14245	transcription start site region 14245	440 bp downstream
Tssr14246	transcription start site region 14246	465 bp downstream