rs238321146 SNP Detail

Summary

• ID
  rs238321146
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172706241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTACACA CCTTTAATCC
  CAGCACTTGG GAGGCAGAGG CAGGCAGAGC TCTGTAAATT CAAGTCCAGC CTGGTCTACA
  AAGTGAGTTC TAGGCCTACA CAGAGAAACC CTGTCTCAAC CCCCCACCCC GAAACAAATA
  AAAACAAAAT AAAAAACAAC TAACAACAAT GAAAACAAAC CAAAAAAATA GAAAAACAAA
  C
  AAACAAAAAA AACAAAACCC ATAACCCCCC CCAACAAAAC AAAACAAAAC AAAACCCTCA
  AAAATCCCCA TAACCTCGGG TATGGTTGAC AAGGTTTGCT GTGAACGACA ACAGATGTTC
  TTGTGCCTAC CAAGGAATTC CAAGGGTGTC AGAAACTGCT AGAACAAACA CAGAATTCTC
  CTCCTCCTCC TCCCCCCTCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356652012	MGP_WTSI_2_172689949	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238321146					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356652012	MGP_WTSI_2_172689949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172706241 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	675 bp downstream
Cpgi12832	CpG island 12832	735 bp distal
Gm36254	predicted gene, 36254	1332 bp upstream
Gm56447	predicted gene, 56447	107 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	281 bp downstream
Rr374298	regulatory region 374298	668 bp upstream
Rr407149	regulatory region 407149	316 bp distal
Rr571760	regulatory region 571760	1945 bp distal
Rr571761	regulatory region 571761	384 bp distal
Rr571762	regulatory region 571762	294 bp proximal
Rr571763	regulatory region 571763	1088 bp proximal