rs238322724 SNP Detail

Summary

• ID
  rs238322724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59703372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tatacagag aaaccctgtc tcgaaaaaac
  aaaaaaaaaa aaaaaaaaaa aaaaccaaca acaaaaaaaT GGATTTTGTG GATTTCAAAA
  ATAAGAGATG AACACATGAG GTACGTTATG TACACATTTA ACATTTCATA AAAATATTCA
  Y
  TATTCACTAA AAATGCATTT AAACTTTAAA AAAAATATAT AGACATCAAT TAATTCCATT
  TTATTTCCTA ATGAAGAAAG CCCAACAAAA TAAAATCAAG CAATTCTAAT TCTTCAGTCT
  ATTATTAAAA TGTAAAAACT GTCTGGGCAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319738949	CHEV_1_59721057	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238322724					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59703372 () rs orientation: forward

Symbol	Name	Function Class
Rr22466	regulatory region 22466	29 bp proximal
Rr371358	regulatory region 371358	28 bp downstream
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	1772 bp upstream