rs238328387 SNP Detail

Summary

• ID
  rs238328387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132240040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTGTCAAC CACACTGCAT TTTTTTTTTT
  TTGACTGCAT TAAGCTGTGG AAAACATCAC TTAAAGCAGT AATCATGTCT ATCTCTGGAT
  CACTCCCTCA GTGGCATGGC ATATTATACT tttgttttca gtactggaat taaaccgtgg
  W
  cttacacatg ctaggaaatg ctctcttgag ctactcctcc atctcTCCAG TGCATATTTT
  TAAACGAATA TGTTATTGTC TTCATAAGAA CAATCCTagc tgggcagtgg tggcacatgc
  ctttaatccc agcacttggg aggcagaggc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333925	CHEV_4_132068644	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238328387					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132240040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1954 bp distal
Gm68741	predicted gene, 68741	232 bp downstream
Rr377206	regulatory region 377206	1660 bp downstream
Rr377207	regulatory region 377207	340 bp upstream
Rr600992	regulatory region 600992	1738 bp distal
Rr600993	regulatory region 600993	331 bp distal
Rr600994	regulatory region 600994	305 bp proximal
Rr600995	regulatory region 600995	475 bp proximal