rs238333592 SNP Detail

Summary

• ID
  rs238333592
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32188391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGCCTCC TGGAAAGTTC CTGACAAGTT
  TACGCGGGTC TCTGCGTGCA GCTGGCCAGC GGTTGGGAGT GGCCAGCGGT CCCCACAGGC
  CGCCTCTGGG AAGCACAGCC AGACGCAGAG GACACGGAGC TCAAGGGACT ACAGGAGCAC
  S
  GCCCGCGCGC CTCAGGCTGC ACAGGGTTTT TGGAATGTAG GGCGTGGCCC TCTGCTACAG
  CTAATGAAGT GAGTCAGGCC CCGCGCAAGC CTAACCAATA AGCGCCTTCA CTGTTGGTTA
  AGGCGGAACC TTCCATTCTT GATTTAGGAC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325792077	CHEV_19_32285481	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238333592					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32188391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10757	CpG island 10757	within coordinates
Gm50210	predicted gene, 50210	1718 bp upstream
Rr546425	regulatory region 546425	within coordinates
Rr546426	regulatory region 546426	12 bp proximal
Sgms1	sphingomyelin synthase 1	within coordinates
Tssr158859	transcription start site region 158859	847 bp upstream
Tssr158860	transcription start site region 158860	within coordinates
Tssr158861	transcription start site region 158861	25 bp downstream