rs238337204 SNP Detail

Summary

• ID
  rs238337204
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83689289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGCTCCG CTGCTCCAGT
  TTTCCCACTC GCTTGGATAC CGCCGGCTCC GGCGCTCCTC CGCCTGGCCT GGCCGCCTGG
  CCTGGCCGAC GCTTTCTTCC TCGGCTCCAC CCGCCCTCAC CCGAAGTCGG AGCCCCTTCA
  CCCATCCCCC TTCAACCCCC GCAGCAAACT TGCTTTCCCG GCACTCTCCT GCCATCGCTC
  M
  TCCAGATCCA AACCTCCAAT GCCAGTATCC TGGGTCTGGG CCTCTCCCAG GTAGACACTT
  GGAGAAAGAA GTCTCGGGTC CTGCGGTCAA CTGGATCCTA GGCCTGAGGC CTGTTGTTTT
  TCCGCCATCC TGGGGTTTCG GACTCACTCA CTTGGCTTCC CCCAGCTGCC TCCCACAGGC
  CTCAGGAGGC CTGTAGCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369037711	MGP_WTSI_6_83662301	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238337204					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369037711	MGP_WTSI_6_83662301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83689289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	within coordinates
D6Mit8	DNA segment, Chr 6, Massachusetts Institute of Technology 8	1562 bp proximal
D6Mit8.1	DNA segment, Chr 6, Massachusetts Institute of Technology 8.1	1719 bp proximal
D6Mit8.2	DNA segment, Chr 6, Massachusetts Institute of Technology 8.2	1517 bp proximal
Gm32943	predicted gene, 32943	491 bp downstream
Gm55235	predicted gene, 55235	1375 bp downstream
Rr632917	regulatory region 632917	1386 bp distal
Rr632918	regulatory region 632918	1782 bp distal
Rr632919	regulatory region 632919	1033 bp distal
Rr632920	regulatory region 632920	within coordinates
Rr632921	regulatory region 632921	1752 bp proximal
Tssr57361	transcription start site region 57361	1019 bp downstream
Tssr61702	transcription start site region 61702	1442 bp upstream
Vax2	ventral anterior homeobox 2	within coordinates
Vax2os	ventral anterior homeobox 2, opposite strand	106 bp upstream