rs238340322 SNP Detail

Summary

• ID
  rs238340322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58599657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGA CCCAGCTGGC AGCGCCCGAG
  Y
  GGTTTCCTCG CTGGGAGCCC TTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320783424	CHEV_3_58496158	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238340322					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58599657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930593A02Rik	RIKEN cDNA 4930593A02 gene			353 bp upstream
Cpgi13205	CpG island 13205			1244 bp distal
Cpgi13206	CpG island 13206			within coordinates
Rr367441	regulatory region 367441			1441 bp downstream
Rr577266	regulatory region 577266			1347 bp distal
Rr577267	regulatory region 577267			888 bp distal
Rr577268	regulatory region 577268			176 bp distal
Rr577269	regulatory region 577269			36 bp proximal
Rr577270	regulatory region 577270			154 bp proximal
Rr577271	regulatory region 577271			395 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29217	transcription start site region 29217			254 bp upstream
Tssr29218	transcription start site region 29218			375 bp upstream
Tssr33366	transcription start site region 33366			221 bp upstream
Tssr33367	transcription start site region 33367			113 bp upstream
Tssr33368	transcription start site region 33368			155 bp downstream
Tssr33369	transcription start site region 33369			189 bp downstream