rs238342519 SNP Detail

Summary

• ID
  rs238342519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136060752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAGATT CCAGGGATCC
  TGGGAAGAAG CTCATAGACA AGATGAGAGA AATCGATGAG ATAGGTTCTC TCTTCCTGCC
  CCAGAGCAGA TGCCCACCCC CCAACTCTGT ATAATCCAGA GAGAAGGCAC GGAGGCTTAG
  TATATAATAG CTCAGGTGCT GAGGGAGGGA GATTGAGGGC TGCTGGTCCA GCAGCTCCTA
  Y
  AGCAGTCAGA ACACCACCCG TGCACACACT CTGCCTGGCA CTGAACAGCC TGAGACAAAG
  AGGAGCCCTG CAGGTGTCTG GTGGGCTGGT GGGGCGGAGC CAGGCTGCCA CTGAAGCTGA
  CATTGCAGCA GGAACCTTTG GAGGTCGAGG GAAGGGGAGC ACGCATGGGC CGGGTGGGAG
  TGAGACATGT CAATATGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351559701	MGP_WTSI_1_138029591	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238342519					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351559701	MGP_WTSI_1_138029591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136060752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi805	CpG island 805			747 bp distal
Gm15850	predicted gene 15850			1831 bp upstream
Kif21b	kinesin family member 21B			Intron
				Noncoding-Transcript-Variant
Rr396320	regulatory region 396320			1603 bp downstream
Rr419368	regulatory region 419368			1842 bp distal
Rr419369	regulatory region 419369			1615 bp distal
Rr419370	regulatory region 419370			1595 bp distal
Tssr9041	transcription start site region 9041			1633 bp downstream
Tssr9042	transcription start site region 9042			1610 bp downstream
Tssr9043	transcription start site region 9043			1573 bp downstream
Tssr9044	transcription start site region 9044			1520 bp downstream
Tssr9045	transcription start site region 9045			22 bp upstream
Tssr13914	transcription start site region 13914			1829 bp upstream
Tssr13915	transcription start site region 13915			31 bp downstream