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rs238343969 SNP Detail
Summary
  • ID
    rs238343969
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr9:46139639 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGAGCCTGT CTGCATCTCA
CTCAGGCTGA CACCTCAGTT GTTTTTGGAT TTAGGGTTGG GAGGCTGGCT AAACATGTGG
CATCTGGAAA GACAAATCCC CAAACCTGGG GGACCAGGGT GAGGTGAAAG GGGGAACCCC
TTGGAAAGCA AAAAAAAAAC TTTGGGGTGG GGCTGTGAGT GAAGGAGCCC ACAATTCCTC
M
CTCCCTCCCT TGTTCCAGGC TCAGAGGGCA CTAGCAACAC AGAGGAGTCC AGGAGTGGGC
TCCATGAGAC TATCTTGAAG AAGACATACA CCTCGGGATG GTGCAACTGC CTTACCCCTG
GGGACCCCTG GAGTCTGCAG CCACCCCCTG CTGCCCCCAC CTGAACCCTT GATCCCAGCT
CGGCAGCCCC CGCAGTTTCC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377451203 MGP_WTSI_9_46036424 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238343969 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss377451203 MGP_WTSI_9_46036424 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:46139639 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoa1 apolipoprotein A-I 289 bp upstream
Cpgi21701 CpG island 21701 1605 bp proximal
Gm67994 predicted gene, 67994 44 bp downstream
Rr195182 regulatory region 195182 362 bp proximal
Rr195183 regulatory region 195183 1162 bp proximal
Rr206362 regulatory region 206362 361 bp proximal
Rr209245 regulatory region 209245 1625 bp distal
Tssr84839 transcription start site region 84839 6 bp upstream
Tssr84840 transcription start site region 84840 360 bp upstream
Tssr84841 transcription start site region 84841 492 bp upstream
Tssr84842 transcription start site region 84842 587 bp upstream
Tssr84843 transcription start site region 84843 610 bp upstream
Tssr84844 transcription start site region 84844 769 bp upstream
Tssr84845 transcription start site region 84845 821 bp upstream
Tssr84846 transcription start site region 84846 860 bp upstream
Tssr84847 transcription start site region 84847 1481 bp upstream
Tssr84848 transcription start site region 84848 1568 bp upstream
Tssr84849 transcription start site region 84849 1660 bp upstream
Tssr84850 transcription start site region 84850 1700 bp upstream
Tssr84851 transcription start site region 84851 1744 bp upstream
Tssr84852 transcription start site region 84852 1763 bp upstream
Tssr84853 transcription start site region 84853 1861 bp upstream
Tssr84854 transcription start site region 84854 1891 bp upstream
Tssr84855 transcription start site region 84855 1910 bp upstream
Tssr84856 transcription start site region 84856 1926 bp upstream
Tssr89313 transcription start site region 89313 1593 bp downstream
Tssr89314 transcription start site region 89314 1653 bp downstream
Tssr89315 transcription start site region 89315 1667 bp downstream
Tssr89316 transcription start site region 89316 1695 bp downstream
Tssr89317 transcription start site region 89317 1707 bp downstream
Tssr89318 transcription start site region 89318 1729 bp downstream
Tssr89319 transcription start site region 89319 1743 bp downstream
Tssr89320 transcription start site region 89320 1752 bp downstream
Tssr89321 transcription start site region 89321 1774 bp downstream
Tssr89322 transcription start site region 89322 1820 bp downstream
Tssr89323 transcription start site region 89323 1885 bp downstream
Tssr89324 transcription start site region 89324 1935 bp downstream
Tssr89325 transcription start site region 89325 1959 bp downstream
Tssr89326 transcription start site region 89326 1999 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory