rs238346544 SNP Detail

Summary

• ID
  rs238346544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106554272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTACAAC GAAGACTCCG
  AACCACTGAG AACTACCATT CCCGACTGGC CAAGTGGCCA GACCTCGAAG CTCGCCTTCC
  TCGTCCACGG TCTCACTTTA TTCTTCTGCC TCAGTTCTGT AGCTAATATC AAATTTGCTG
  TATTGACTGG TTCTCAGAAT ACCCCATCCC CAGCTCCAGG TCTACTTTTA CTGCTTGGCC
  W
  TTCTCCAGAG TGCTCACGGG GGCGGGGGCT GGAGGCGTGG CTCAACTGTG AGCCCGCCCT
  CAACGCAGAG GCTGCTGGGG TCTGGTCCCT ATGGCAACGG ACTGTACACT ACCGCAACGG
  CTCAATCCTG CATCTGCTCC AAAGTCATGG CCAACCTACA GGAGCGTAAA AGTTTCTCCA
  AGCCAAGGTA GCACCTGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375919902	MGP_WTSI_8_108351540	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238346544					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375919902	MGP_WTSI_8_108351540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106554272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	within coordinates
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	260 bp downstream
Rr669016	regulatory region 669016	within coordinates
Rr669017	regulatory region 669017	115 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	91 bp upstream
Tssr79188	transcription start site region 79188	81 bp upstream
Tssr79189	transcription start site region 79189	113 bp upstream
Tssr79190	transcription start site region 79190	130 bp upstream
Tssr82694	transcription start site region 82694	1308 bp upstream
Tssr82695	transcription start site region 82695	426 bp upstream
Tssr82696	transcription start site region 82696	36 bp upstream
Tssr82697	transcription start site region 82697	3 bp upstream
Tssr82698	transcription start site region 82698	2 bp downstream
Tssr82699	transcription start site region 82699	40 bp downstream