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rs238347977 SNP Detail
Summary
  • ID
    rs238347977
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129832 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCACCCTTC CTTCTCCTAC
TTCTCTGGTG TCTTACTCCC CCCCCCCCAC ACACACACCT TCTCCTTATC TCACCCTCTC
CCTGCATCTC CTCTTTCTCC AACTTCCTGT CCTGTCTGCC TCTCTTCTTC ATCCTACTCA
CCCTCCTCCA CTTCCAACTG TTTTCTCTTC AGCCCATCTC CTTTCTAGCT CCTTCTCTAT
K
CCTCATCTTC CTTTCTCTGT ACCCTCTTCC CCCACTTCCT CATCCTCTCC TCTCTTCCTT
CTTGCCCTCA TCTTTTCCTG CAGCTCCAGT TCTCCCATCA TGTTTCTCTT GCTCTTCCTT
CTCCATCCAT CACTTTCCTC TTCCTTCCAA TTCTCATTTC CTTCCTCCTT TTCCTTAGTC
CTGTCTACCA CTACCTCTTC                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156138 MGP_WTSI_7_51735778 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238347977 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156138 MGP_WTSI_7_51735778 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129832 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1388 bp downstream
Tssr2228 transcription start site region 2228 325 bp downstream
Tssr2229 transcription start site region 2229 50 bp downstream
Tssr2230 transcription start site region 2230 125 bp upstream
Tssr2231 transcription start site region 2231 258 bp upstream
Tssr2232 transcription start site region 2232 433 bp upstream
Tssr2233 transcription start site region 2233 466 bp upstream
Tssr2234 transcription start site region 2234 625 bp upstream
Tssr2235 transcription start site region 2235 1259 bp upstream
Tssr66276 transcription start site region 66276 1990 bp downstream
Tssr66277 transcription start site region 66277 1970 bp downstream
Tssr66278 transcription start site region 66278 1926 bp downstream
Tssr66279 transcription start site region 66279 1881 bp downstream
Tssr66280 transcription start site region 66280 1859 bp downstream
Tssr66281 transcription start site region 66281 1819 bp downstream
Tssr66282 transcription start site region 66282 1802 bp downstream
Tssr66283 transcription start site region 66283 1788 bp downstream
Tssr66284 transcription start site region 66284 1776 bp downstream
Tssr66285 transcription start site region 66285 1762 bp downstream
Tssr66286 transcription start site region 66286 1723 bp downstream
Tssr66287 transcription start site region 66287 1687 bp downstream
Tssr66288 transcription start site region 66288 1662 bp downstream
Tssr66289 transcription start site region 66289 1580 bp downstream
Tssr66290 transcription start site region 66290 1542 bp downstream
Tssr66291 transcription start site region 66291 1516 bp downstream
Tssr66292 transcription start site region 66292 1484 bp downstream
Tssr66293 transcription start site region 66293 1462 bp downstream
Tssr66294 transcription start site region 66294 1438 bp downstream
Tssr66295 transcription start site region 66295 1173 bp downstream
Tssr66296 transcription start site region 66296 1002 bp downstream
Tssr66297 transcription start site region 66297 978 bp downstream
Tssr66298 transcription start site region 66298 923 bp downstream
Tssr66299 transcription start site region 66299 903 bp downstream
Tssr66300 transcription start site region 66300 880 bp downstream
Tssr66301 transcription start site region 66301 864 bp downstream
Tssr66302 transcription start site region 66302 823 bp downstream
Tssr66303 transcription start site region 66303 814 bp downstream
Tssr66304 transcription start site region 66304 809 bp downstream
Tssr66305 transcription start site region 66305 770 bp downstream
Tssr66306 transcription start site region 66306 716 bp downstream
Tssr66307 transcription start site region 66307 667 bp downstream
Tssr66308 transcription start site region 66308 650 bp downstream
Tssr66309 transcription start site region 66309 600 bp downstream
Tssr66310 transcription start site region 66310 531 bp downstream
Tssr66311 transcription start site region 66311 508 bp downstream
Tssr66312 transcription start site region 66312 489 bp downstream
Tssr66313 transcription start site region 66313 479 bp downstream
Tssr66314 transcription start site region 66314 461 bp downstream
Tssr66315 transcription start site region 66315 454 bp downstream
Tssr66316 transcription start site region 66316 389 bp downstream
Tssr66317 transcription start site region 66317 373 bp downstream
Tssr66318 transcription start site region 66318 332 bp downstream
Tssr66319 transcription start site region 66319 304 bp downstream
Tssr66320 transcription start site region 66320 280 bp downstream
Tssr66321 transcription start site region 66321 256 bp downstream
Tssr66322 transcription start site region 66322 240 bp downstream
Tssr66323 transcription start site region 66323 202 bp downstream
Tssr66324 transcription start site region 66324 149 bp downstream
Tssr66325 transcription start site region 66325 108 bp downstream
Tssr66326 transcription start site region 66326 98 bp downstream
Tssr66327 transcription start site region 66327 78 bp downstream
Tssr66328 transcription start site region 66328 60 bp downstream
Tssr66329 transcription start site region 66329 21 bp downstream
Tssr66330 transcription start site region 66330 8 bp downstream
Tssr66331 transcription start site region 66331 within coordinates
Tssr66332 transcription start site region 66332 16 bp upstream
Tssr66333 transcription start site region 66333 64 bp upstream
Tssr66334 transcription start site region 66334 76 bp upstream
Tssr66335 transcription start site region 66335 85 bp upstream
Tssr66336 transcription start site region 66336 94 bp upstream
Tssr66337 transcription start site region 66337 112 bp upstream
Tssr66338 transcription start site region 66338 168 bp upstream
Tssr66339 transcription start site region 66339 219 bp upstream
Tssr66340 transcription start site region 66340 264 bp upstream
Tssr66341 transcription start site region 66341 309 bp upstream
Tssr66342 transcription start site region 66342 371 bp upstream
Tssr66343 transcription start site region 66343 403 bp upstream
Tssr66344 transcription start site region 66344 548 bp upstream
Tssr66345 transcription start site region 66345 581 bp upstream
Tssr66346 transcription start site region 66346 637 bp upstream
Tssr66347 transcription start site region 66347 675 bp upstream
Tssr66348 transcription start site region 66348 716 bp upstream
Tssr66349 transcription start site region 66349 740 bp upstream
Tssr66350 transcription start site region 66350 768 bp upstream
Tssr66351 transcription start site region 66351 776 bp upstream
Tssr66352 transcription start site region 66352 812 bp upstream
Tssr66353 transcription start site region 66353 886 bp upstream
Tssr66354 transcription start site region 66354 900 bp upstream
Tssr66355 transcription start site region 66355 927 bp upstream
Tssr66356 transcription start site region 66356 944 bp upstream
Tssr66357 transcription start site region 66357 958 bp upstream
Tssr66358 transcription start site region 66358 970 bp upstream
Tssr66359 transcription start site region 66359 996 bp upstream
Tssr66360 transcription start site region 66360 1008 bp upstream
Tssr66361 transcription start site region 66361 1034 bp upstream
Tssr66362 transcription start site region 66362 1066 bp upstream
Tssr66363 transcription start site region 66363 1083 bp upstream
Tssr66364 transcription start site region 66364 1116 bp upstream
Tssr66365 transcription start site region 66365 1136 bp upstream
Tssr66366 transcription start site region 66366 1156 bp upstream
Tssr66367 transcription start site region 66367 1184 bp upstream
Tssr66368 transcription start site region 66368 1206 bp upstream
Tssr66369 transcription start site region 66369 1240 bp upstream
Tssr66370 transcription start site region 66370 1282 bp upstream
Tssr66371 transcription start site region 66371 1707 bp upstream
Tssr66372 transcription start site region 66372 1870 bp upstream
Tssr72200 transcription start site region 72200 1967 bp upstream
Tssr72201 transcription start site region 72201 1457 bp upstream
Tssr72202 transcription start site region 72202 600 bp upstream
Tssr72203 transcription start site region 72203 220 bp upstream
Tssr72204 transcription start site region 72204 367 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory