rs238353449 SNP Detail

Summary

• ID
  rs238353449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44129040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TTCTCCTGCT CCTCATATGT
  Y
  CTATTTCTCC TTATTAATCC CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322198938	CHEV_7_51734986	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238353449					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44129040 () rs orientation: forward

Symbol	Name	Function Class
Tssr2226	transcription start site region 2226	1671 bp downstream
Tssr2227	transcription start site region 2227	596 bp downstream
Tssr2228	transcription start site region 2228	462 bp upstream
Tssr2229	transcription start site region 2229	738 bp upstream
Tssr2230	transcription start site region 2230	917 bp upstream
Tssr2231	transcription start site region 2231	1050 bp upstream
Tssr2232	transcription start site region 2232	1225 bp upstream
Tssr2233	transcription start site region 2233	1258 bp upstream
Tssr2234	transcription start site region 2234	1417 bp upstream
Tssr66250	transcription start site region 66250	1998 bp downstream
Tssr66251	transcription start site region 66251	1973 bp downstream
Tssr66252	transcription start site region 66252	1942 bp downstream
Tssr66253	transcription start site region 66253	1914 bp downstream
Tssr66254	transcription start site region 66254	1866 bp downstream
Tssr66255	transcription start site region 66255	1839 bp downstream
Tssr66256	transcription start site region 66256	1790 bp downstream
Tssr66257	transcription start site region 66257	1779 bp downstream
Tssr66258	transcription start site region 66258	1736 bp downstream
Tssr66259	transcription start site region 66259	1700 bp downstream
Tssr66260	transcription start site region 66260	1593 bp downstream
Tssr66261	transcription start site region 66261	1572 bp downstream
Tssr66262	transcription start site region 66262	1565 bp downstream
Tssr66263	transcription start site region 66263	1553 bp downstream
Tssr66264	transcription start site region 66264	1529 bp downstream
Tssr66265	transcription start site region 66265	1486 bp downstream
Tssr66266	transcription start site region 66266	1469 bp downstream
Tssr66267	transcription start site region 66267	1432 bp downstream
Tssr66268	transcription start site region 66268	1416 bp downstream
Tssr66269	transcription start site region 66269	1380 bp downstream
Tssr66270	transcription start site region 66270	1345 bp downstream
Tssr66271	transcription start site region 66271	1313 bp downstream
Tssr66272	transcription start site region 66272	1261 bp downstream
Tssr66273	transcription start site region 66273	1243 bp downstream
Tssr66274	transcription start site region 66274	1238 bp downstream
Tssr66275	transcription start site region 66275	1218 bp downstream
Tssr66276	transcription start site region 66276	1198 bp downstream
Tssr66277	transcription start site region 66277	1178 bp downstream
Tssr66278	transcription start site region 66278	1134 bp downstream
Tssr66279	transcription start site region 66279	1089 bp downstream
Tssr66280	transcription start site region 66280	1067 bp downstream
Tssr66281	transcription start site region 66281	1027 bp downstream
Tssr66282	transcription start site region 66282	1010 bp downstream
Tssr66283	transcription start site region 66283	996 bp downstream
Tssr66284	transcription start site region 66284	984 bp downstream
Tssr66285	transcription start site region 66285	970 bp downstream
Tssr66286	transcription start site region 66286	931 bp downstream
Tssr66287	transcription start site region 66287	895 bp downstream
Tssr66288	transcription start site region 66288	870 bp downstream
Tssr66289	transcription start site region 66289	788 bp downstream
Tssr66290	transcription start site region 66290	750 bp downstream
Tssr66291	transcription start site region 66291	724 bp downstream
Tssr66292	transcription start site region 66292	692 bp downstream
Tssr66293	transcription start site region 66293	670 bp downstream
Tssr66294	transcription start site region 66294	646 bp downstream
Tssr66295	transcription start site region 66295	381 bp downstream
Tssr66296	transcription start site region 66296	210 bp downstream
Tssr66297	transcription start site region 66297	186 bp downstream
Tssr66298	transcription start site region 66298	131 bp downstream
Tssr66299	transcription start site region 66299	111 bp downstream
Tssr66300	transcription start site region 66300	88 bp downstream
Tssr66301	transcription start site region 66301	72 bp downstream
Tssr66302	transcription start site region 66302	31 bp downstream
Tssr66303	transcription start site region 66303	22 bp downstream
Tssr66304	transcription start site region 66304	17 bp downstream
Tssr66305	transcription start site region 66305	within coordinates
Tssr66306	transcription start site region 66306	24 bp upstream
Tssr66307	transcription start site region 66307	81 bp upstream
Tssr66308	transcription start site region 66308	134 bp upstream
Tssr66309	transcription start site region 66309	155 bp upstream
Tssr66310	transcription start site region 66310	193 bp upstream
Tssr66311	transcription start site region 66311	270 bp upstream
Tssr66312	transcription start site region 66312	286 bp upstream
Tssr66313	transcription start site region 66313	307 bp upstream
Tssr66314	transcription start site region 66314	315 bp upstream
Tssr66315	transcription start site region 66315	335 bp upstream
Tssr66316	transcription start site region 66316	394 bp upstream
Tssr66317	transcription start site region 66317	406 bp upstream
Tssr66318	transcription start site region 66318	451 bp upstream
Tssr66319	transcription start site region 66319	474 bp upstream
Tssr66320	transcription start site region 66320	501 bp upstream
Tssr66321	transcription start site region 66321	519 bp upstream
Tssr66322	transcription start site region 66322	539 bp upstream
Tssr66323	transcription start site region 66323	585 bp upstream
Tssr66324	transcription start site region 66324	614 bp upstream
Tssr66325	transcription start site region 66325	644 bp upstream
Tssr66326	transcription start site region 66326	685 bp upstream
Tssr66327	transcription start site region 66327	699 bp upstream
Tssr66328	transcription start site region 66328	715 bp upstream
Tssr66329	transcription start site region 66329	754 bp upstream
Tssr66330	transcription start site region 66330	773 bp upstream
Tssr66331	transcription start site region 66331	787 bp upstream
Tssr66332	transcription start site region 66332	808 bp upstream
Tssr66333	transcription start site region 66333	856 bp upstream
Tssr66334	transcription start site region 66334	868 bp upstream
Tssr66335	transcription start site region 66335	877 bp upstream
Tssr66336	transcription start site region 66336	886 bp upstream
Tssr66337	transcription start site region 66337	904 bp upstream
Tssr66338	transcription start site region 66338	960 bp upstream
Tssr66339	transcription start site region 66339	1011 bp upstream
Tssr66340	transcription start site region 66340	1056 bp upstream
Tssr66341	transcription start site region 66341	1101 bp upstream
Tssr66342	transcription start site region 66342	1163 bp upstream
Tssr66343	transcription start site region 66343	1195 bp upstream
Tssr66344	transcription start site region 66344	1340 bp upstream
Tssr66345	transcription start site region 66345	1373 bp upstream
Tssr66346	transcription start site region 66346	1429 bp upstream
Tssr66347	transcription start site region 66347	1467 bp upstream
Tssr66348	transcription start site region 66348	1508 bp upstream
Tssr66349	transcription start site region 66349	1532 bp upstream
Tssr66350	transcription start site region 66350	1560 bp upstream
Tssr66351	transcription start site region 66351	1568 bp upstream
Tssr66352	transcription start site region 66352	1604 bp upstream
Tssr66353	transcription start site region 66353	1678 bp upstream
Tssr66354	transcription start site region 66354	1692 bp upstream
Tssr66355	transcription start site region 66355	1719 bp upstream
Tssr66356	transcription start site region 66356	1736 bp upstream
Tssr66357	transcription start site region 66357	1750 bp upstream
Tssr66358	transcription start site region 66358	1762 bp upstream
Tssr66359	transcription start site region 66359	1788 bp upstream
Tssr66360	transcription start site region 66360	1800 bp upstream
Tssr66361	transcription start site region 66361	1826 bp upstream
Tssr66362	transcription start site region 66362	1858 bp upstream
Tssr66363	transcription start site region 66363	1875 bp upstream
Tssr66364	transcription start site region 66364	1908 bp upstream
Tssr66365	transcription start site region 66365	1928 bp upstream
Tssr66366	transcription start site region 66366	1948 bp upstream
Tssr66367	transcription start site region 66367	1976 bp upstream
Tssr66368	transcription start site region 66368	1998 bp upstream
Tssr72200	transcription start site region 72200	1175 bp upstream
Tssr72201	transcription start site region 72201	665 bp upstream
Tssr72202	transcription start site region 72202	177 bp downstream
Tssr72203	transcription start site region 72203	563 bp downstream
Tssr72204	transcription start site region 72204	1159 bp downstream