rs238354181 SNP Detail

Summary

• ID
  rs238354181
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145810269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACCACTGG
  GAAGGAAGCG CTGCTCAGCT CCCCACAGTC AGGTCGTCAA TGATCTCTGC CATTAGCCCG
  GAGCCCCTGT TCTGAGTCTC TGGGAAACTC TTAGTTACAG CACAAGTTAG AAGGCAGGCC
  TCTTAATATT TACATTTATT ATCCTATCTC TGGGAATTTT ATCAGGTAAA TACACCCCGG
  W
  GTCCATCAGG AGAATGAAAA TGTGCATCTT ACTGTCAATT TCAGATGTTC GGGCAGTAAA
  TCTTTCAGCT GAGCAATGCA TTCATTAATT CGGTCTCGTC TCTTCTTTTC TATTAATCTG
  TGCGGTAACT TGTAGGTATC CTTCATACAC GAGCCAGAGA AAAGATACAG CAGTGAGCTA
  AACATTCATT CACTTACTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370464781	MGP_WTSI_6_145813063	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238354181					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370464781	MGP_WTSI_6_145813063	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145810269 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	within coordinates
Cpgi18162	CpG island 18162	361 bp distal
Cpgi18163	CpG island 18163	593 bp proximal
Gm43909	predicted gene, 43909	within coordinates
Gm67122	predicted gene, 67122	within coordinates
Gm67128	predicted gene, 67128	within coordinates
Gm67129	predicted gene, 67129	1141 bp upstream
Rr641233	regulatory region 641233	1666 bp distal
Rr641234	regulatory region 641234	1560 bp distal
Rr641235	regulatory region 641235	652 bp distal
Rr641236	regulatory region 641236	489 bp distal
Rr641237	regulatory region 641237	749 bp proximal
Rr641238	regulatory region 641238	1152 bp proximal
Tssr59561	transcription start site region 59561	1779 bp downstream
Tssr59562	transcription start site region 59562	657 bp downstream
Tssr59563	transcription start site region 59563	1132 bp upstream
Tssr64076	transcription start site region 64076	1863 bp upstream
Tssr64077	transcription start site region 64077	1716 bp upstream
Tssr64078	transcription start site region 64078	1359 bp upstream
Tssr64079	transcription start site region 64079	1292 bp upstream
Tssr64080	transcription start site region 64080	932 bp upstream
Tssr64081	transcription start site region 64081	901 bp upstream
Tssr64082	transcription start site region 64082	878 bp upstream
Tssr64083	transcription start site region 64083	761 bp upstream
Tssr64084	transcription start site region 64084	708 bp upstream
Tssr64085	transcription start site region 64085	145 bp downstream
Tssr64086	transcription start site region 64086	344 bp downstream
Tssr64087	transcription start site region 64087	792 bp downstream
Tssr64088	transcription start site region 64088	828 bp downstream
Tssr64089	transcription start site region 64089	842 bp downstream
Tssr64090	transcription start site region 64090	889 bp downstream
Tssr64091	transcription start site region 64091	901 bp downstream
Tssr64092	transcription start site region 64092	940 bp downstream
Tssr64093	transcription start site region 64093	1005 bp downstream
Tssr64094	transcription start site region 64094	1021 bp downstream