rs238363489 SNP Detail

Summary

• ID
  rs238363489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95241136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttacagcta gaaaaagctc tctttaaagt
  ttgtgatcct cctgagggaa CTGAGAGGAA GTGTTTACTG ATTAGATGTA GTTATGAAGT
  TTGACATCAA GGAAATTAAA TCGAGTTTCC TATTGCTCCC GTTTCCCCAC TTGGAAAGAA
  Y
  TGTAGGCATA ACTGTTCATC TTGTTCAGGT TACCCACTCT GGCCCAAGCC TTTTCACTAT
  TAGGAACACT CCTGAAACAT GGAAAACCTA GTTGGGACCT CTCAGAGCGT CCCACAGCTA
  CGCGTGCGCA ATAGGCTCGA ACCTCTGACG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848318	CHEV_1_97209988	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238363489					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95241136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	17 bp proximal
Fam174a	family with sequence similarity 174, member A	217 bp upstream
Rr29863	regulatory region 29863	within coordinates
Rr396183	regulatory region 396183	within coordinates
Tssr8214	transcription start site region 8214	196 bp upstream
Tssr8215	transcription start site region 8215	267 bp upstream
Tssr8216	transcription start site region 8216	676 bp upstream
Tssr8217	transcription start site region 8217	695 bp upstream
Tssr8218	transcription start site region 8218	713 bp upstream
Tssr8219	transcription start site region 8219	739 bp upstream
Tssr13058	transcription start site region 13058	644 bp downstream