rs238365642 SNP Detail

Summary

• ID
  rs238365642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85122512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCAGAGA GAAGCGAACC
  CTGTGGCCCT GATACCAAAA GGTGAATTAT TAAGAATTAG CATGTCCCTC CTGCCTAAAT
  CCTCTAACCA ATGTTTATCC CAATGCCTCC ACGGTAGTTT AGAAATTAGA AAGTACCACA
  GATTGGAAGG TCTGGGCAGC AGCAAGGACC ACAAGACTAC AGACCCCTTC CTTCCTTTTG
  Y
  TTTGCTTTGC AGACTGGAAG GGTATGCTCA CTGCTCACTG CTCCGATATT CTGTTGTGCT
  GTGATTCACA GTAGCAAGGG TGAGTGGTAC CCAGCCCGTG TCTAGAATCC CCTTGCACCT
  GCTCTTCCGT TCATCTTTAC TCAAGCTGCA GAAGTCTACT GGCTTCCTTT ACACCAGGCA
  GTAGAGGGGG GGGGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362251458	MGP_WTSI_4_84850179	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238365642					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362251458	MGP_WTSI_4_84850179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85122512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	805 bp proximal
Rr594659	regulatory region 594659	613 bp proximal
Rr594660	regulatory region 594660	1271 bp proximal
Rr594661	regulatory region 594661	1386 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	1151 bp upstream
Tssr37705	transcription start site region 37705	845 bp upstream
Tssr37706	transcription start site region 37706	861 bp upstream
Tssr37707	transcription start site region 37707	876 bp upstream
Tssr37708	transcription start site region 37708	934 bp upstream
Tssr37709	transcription start site region 37709	1142 bp upstream
Tssr37710	transcription start site region 37710	1228 bp upstream
Tssr37711	transcription start site region 37711	1243 bp upstream
Tssr37712	transcription start site region 37712	1400 bp upstream