rs238376855 SNP Detail

Summary

• ID
  rs238376855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56703799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCACCC GCCCGTGCGC
  TCACACTCGC GCACACCCGG GCGCGCACAC ACCCCCGCCG CTACACACCC GACTCTGCAC
  TTTGGGTTCT CGCCCTCCTG GGGAGCTCAT CAAGGTTCCC CGCTGCCACA ACGACCTCTC
  CGCGAGACCC TTCCTGGGCC GACCGCGCCT CACGTTCCCC GCTGCTCCCA GAGGACACCC
  S
  GCGGGCGTTC CCGCTCCTCC GCTGTGCCCT GCCCCGTCGT GGCCGCGCTA ACAACCCCAG
  CCCCGGGCCC AGCTACCCCA CTCCTGCGGC TTCCCCCGCA CTCCCGCCCA CAGCCGTGTG
  CTCTTGATTC TTTCGGTCGC TGCTCTTGTC TTCCACCTGT CCCCGACCAG TCTCCGGCCT
  CTCCCGCTGC CTTTCCTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss377676498	MGP_WTSI_9_56644322	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238376855					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377676498	MGP_WTSI_9_56644322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56703799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	within coordinates
Gm31586	predicted gene, 31586	477 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1	47 bp upstream
Rr679503	regulatory region 679503	388 bp distal
Rr679504	regulatory region 679504	247 bp distal
Rr679505	regulatory region 679505	within coordinates
Rr679506	regulatory region 679506	595 bp proximal
Rr679507	regulatory region 679507	1292 bp proximal
Tssr89733	transcription start site region 89733	691 bp upstream
Tssr89734	transcription start site region 89734	272 bp upstream
Tssr89735	transcription start site region 89735	196 bp upstream
Tssr89736	transcription start site region 89736	357 bp downstream