rs238381093 SNP Detail

Summary

• ID
  rs238381093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63132098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCATGAA CGAAATACCA
  AAAAAATGTA AATAAAGACA GGATGTGCCT GGCACAAAGT ATGCAGCTCA GAAACACACA
  GCAGCTGTGA TTGGGCAGGG AATACTTTAC CTTCGAAGCT GTGAACTTAG GAAAATTCGA
  GAAAGACCCG CGGCCCTTTC TCAGGCACAG ACACGGGCAA TCAGTGCAGA GCATCGGGTG
  Y
  TCTTGTGAAG GAAGGTGAAG CACTCAGACT GGAGGCGGGG GGGGGGGGGG TGCGCGGGGG
  GCCCCAGCAG CCCCGGGTGC TCTGCCCCCT GCAGGATGCC TCGTACAGCT CGGCGGAGCC
  CTCCCCCACT CCGACTTGGG ACTTTTCCGA AAGTTTGCTG AAACCAGACA CCTTGCTTGA
  CGGTGCCCGC GTGCAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321144711	CHEV_4_62874895	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238381093					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63132098 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	148 bp upstream
Cpgi14368	CpG island 14368	111 bp proximal
Rr593488	regulatory region 593488	within coordinates
Rr593489	regulatory region 593489	79 bp proximal
Rr593490	regulatory region 593490	601 bp proximal
Rr593491	regulatory region 593491	1084 bp proximal
Rr593492	regulatory region 593492	1434 bp proximal
Rr593493	regulatory region 593493	1585 bp proximal
Tssr1192	transcription start site region 1192	163 bp upstream
Tssr37533	transcription start site region 37533	227 bp upstream
Tssr37534	transcription start site region 37534	273 bp upstream
Tssr37535	transcription start site region 37535	1541 bp upstream
Tssr37536	transcription start site region 37536	1679 bp upstream
Tssr37537	transcription start site region 37537	1696 bp upstream