rs238383263 SNP Detail

Summary

• ID
  rs238383263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87055622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGACTGCG GCTTGGCACC
  CCCTGCAGAT GAAAGCCAGA CCACCACGAC AACCCGCCAG ACCACCATCA CCACCACCAC
  CACCACCACC ACCACCACAA CCACCCCGGT CCATAACAGC GCCAGAAGCC TGGGCCCAGC
  CACCGCCCCG CTGGCTCTGG CGCTGCTGGC CGGAATGCTG ATGCTACTAC TAGGGGCTCC
  Y
  GCGGAGTCCT AAACTCCAGC ACATCTAGGC TCCACCCACT AGGTCCCACG CCCTCACCTG
  GTCCTTCCCT TCCCTGACCT CAGTGCTCCC TGCATTCTGG GTGCGGGCTC TACCCCAGGA
  TCCTCTCTCT GTCTTTCTGC TACTGGCCTC ATGTCTAGCC CTACCTTGCA TTGCAGCTTC
  CAGGTTCCTC CTACCCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380336	MGP_WTSI_1_89024475	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238383263					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380336	MGP_WTSI_1_89024475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87055622 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	within coordinates
Rr17963	regulatory region 17963	822 bp distal
Tssr145	transcription start site region 145	1548 bp downstream
Tssr146	transcription start site region 146	306 bp downstream
Tssr147	transcription start site region 147	40 bp downstream
Tssr148	transcription start site region 148	702 bp upstream
Tssr7784	transcription start site region 7784	1962 bp downstream
Tssr7785	transcription start site region 7785	1923 bp downstream
Tssr7786	transcription start site region 7786	1896 bp downstream
Tssr7787	transcription start site region 7787	1567 bp downstream
Tssr7788	transcription start site region 7788	1169 bp downstream
Tssr7789	transcription start site region 7789	1135 bp downstream
Tssr7790	transcription start site region 7790	1082 bp downstream
Tssr7791	transcription start site region 7791	955 bp downstream
Tssr7792	transcription start site region 7792	929 bp downstream
Tssr7793	transcription start site region 7793	918 bp downstream
Tssr7794	transcription start site region 7794	905 bp downstream
Tssr7795	transcription start site region 7795	873 bp downstream
Tssr7796	transcription start site region 7796	850 bp downstream
Tssr7797	transcription start site region 7797	837 bp downstream
Tssr7798	transcription start site region 7798	799 bp downstream
Tssr7799	transcription start site region 7799	562 bp downstream
Tssr7800	transcription start site region 7800	526 bp downstream
Tssr7801	transcription start site region 7801	481 bp downstream
Tssr7802	transcription start site region 7802	359 bp downstream
Tssr7803	transcription start site region 7803	299 bp downstream
Tssr7804	transcription start site region 7804	274 bp downstream
Tssr7805	transcription start site region 7805	205 bp downstream
Tssr7806	transcription start site region 7806	189 bp downstream
Tssr7807	transcription start site region 7807	160 bp downstream
Tssr7808	transcription start site region 7808	64 bp downstream
Tssr7809	transcription start site region 7809	3 bp upstream
Tssr7810	transcription start site region 7810	28 bp upstream
Tssr7811	transcription start site region 7811	57 bp upstream
Tssr7812	transcription start site region 7812	107 bp upstream
Tssr7813	transcription start site region 7813	148 bp upstream
Tssr7814	transcription start site region 7814	178 bp upstream
Tssr7815	transcription start site region 7815	246 bp upstream
Tssr7816	transcription start site region 7816	286 bp upstream
Tssr7817	transcription start site region 7817	298 bp upstream
Tssr7818	transcription start site region 7818	473 bp upstream
Tssr7819	transcription start site region 7819	789 bp upstream
Tssr12841	transcription start site region 12841	1092 bp upstream
Tssr12842	transcription start site region 12842	772 bp upstream
Tssr12843	transcription start site region 12843	509 bp upstream
Tssr12844	transcription start site region 12844	304 bp upstream
Tssr12845	transcription start site region 12845	108 bp upstream
Tssr12846	transcription start site region 12846	67 bp upstream
Tssr12847	transcription start site region 12847	380 bp downstream
Tssr12848	transcription start site region 12848	449 bp downstream
Tssr12849	transcription start site region 12849	468 bp downstream