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rs238383285 SNP Detail
Summary
  • ID
    rs238383285
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:46141575 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCAGGAGCT GCAAGGGAGA
CTGTCCCCTG TGGCTGAGGA ATTTCGCGAC CGCATGCGCA CACACGTAGA CTCTCTGCGC
ACACAGCTAG CGCCCCACAG CGAACAGATG CGCGAGAGCC TGGCCCAGCG CCTGGCTGAG
CTCAAGAGCA ACCCTACCTT GAACGAGTAC CACACCAGGG CCAAAACCCA CCTGAAGACA
Y
TTGGCGAGAA AGCCAGACCT GCGCTGGAGG ACCTGCGCCA TAGTCTGATG CCCATGCTGG
AGACGCTTAA GACCCAAGTC CAGAGTGTGA TCGACAAGGC CAGCGAGACT CTGACTGCCC
AGTGAGGTGC CCGCTTCCAC TCCCCACCCC CGCATTGGCT TTCTTACAAT AAACCTTTCC
AAAATGGAAT AGCTTCTTTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377451220 MGP_WTSI_9_46038360 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238383285 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss377451220 MGP_WTSI_9_46038360 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:46141575 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoa1 apolipoprotein A-I within coordinates
Cpgi21701 CpG island 21701 within coordinates
Gm67994 predicted gene, 67994 1980 bp downstream
Rr195182 regulatory region 195182 1375 bp distal
Rr195183 regulatory region 195183 575 bp distal
Rr206362 regulatory region 206362 within coordinates
Tssr84839 transcription start site region 84839 1903 bp downstream
Tssr84840 transcription start site region 84840 1563 bp downstream
Tssr84841 transcription start site region 84841 1433 bp downstream
Tssr84842 transcription start site region 84842 1331 bp downstream
Tssr84843 transcription start site region 84843 1297 bp downstream
Tssr84844 transcription start site region 84844 1123 bp downstream
Tssr84845 transcription start site region 84845 1086 bp downstream
Tssr84846 transcription start site region 84846 1031 bp downstream
Tssr84847 transcription start site region 84847 369 bp downstream
Tssr84848 transcription start site region 84848 291 bp downstream
Tssr84849 transcription start site region 84849 255 bp downstream
Tssr84850 transcription start site region 84850 213 bp downstream
Tssr84851 transcription start site region 84851 178 bp downstream
Tssr84852 transcription start site region 84852 81 bp downstream
Tssr84853 transcription start site region 84853 47 bp downstream
Tssr84854 transcription start site region 84854 34 bp downstream
Tssr84855 transcription start site region 84855 14 bp downstream
Tssr84856 transcription start site region 84856 3 bp downstream
Tssr84857 transcription start site region 84857 108 bp upstream
Tssr84858 transcription start site region 84858 127 bp upstream
Tssr89313 transcription start site region 89313 302 bp upstream
Tssr89314 transcription start site region 89314 274 bp upstream
Tssr89315 transcription start site region 89315 251 bp upstream
Tssr89316 transcription start site region 89316 231 bp upstream
Tssr89317 transcription start site region 89317 222 bp upstream
Tssr89318 transcription start site region 89318 198 bp upstream
Tssr89319 transcription start site region 89319 188 bp upstream
Tssr89320 transcription start site region 89320 175 bp upstream
Tssr89321 transcription start site region 89321 150 bp upstream
Tssr89322 transcription start site region 89322 67 bp upstream
Tssr89323 transcription start site region 89323 15 bp upstream
Tssr89324 transcription start site region 89324 within coordinates
Tssr89325 transcription start site region 89325 23 bp downstream
Tssr89326 transcription start site region 89326 63 bp downstream
Tssr89327 transcription start site region 89327 184 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory