rs238386937 SNP Detail

Summary

• ID
  rs238386937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71146192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGCATG GGCTTCTGTA
  TTTGCCAGGC ATTGGCATCA GGCTGGTGTT TCTTTGTTGA GACAGGGTCT CAGTTTGTTG
  TCCAGTCTGG CCTTGGCTGT GGTCATCCTC CTGGTCTCAG CTTCCAGAGG TCTGGGCTAG
  AAGGCTGAAA GGTGTGAGAT GTGCAACGAC TTGTTTTTCC AACCCTCCTC AGCCCTCCCT
  Y
  CAAGTCACTC CCTAGCCATA TCAGCTCAGG TCTGTCCTGG GAGGGGGGGG TTGCTCTGAG
  GGACCCCAGA CCTGGGCTCT ACAAATACCT GCCTCCCAGT TCTTCAAAAA CAGGAGGTCT
  GTGTGCACAG CTGCCTCAGT TTCCCCCACT TACTGCCCCC TCCGGAAAAT CTTTCAATGC
  TATTCATTCA CACAGCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375104742	MGP_WTSI_8_73217441	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238386937					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104742	MGP_WTSI_8_73217441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71146192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20484	CpG island 20484	1246 bp distal
Cpgi20485	CpG island 20485	1880 bp proximal
Gm39191	predicted gene, 39191	1187 bp upstream
Gm64207	predicted gene, 64207	1692 bp upstream
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	2000 bp upstream
Rr400910	regulatory region 400910	1737 bp upstream
Rr664886	regulatory region 664886	897 bp distal
Rr664887	regulatory region 664887	66 bp proximal
Rr664888	regulatory region 664888	1514 bp proximal