rs238389052 SNP Detail

Summary

• ID
  rs238389052
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACTCGC GGGTCCAGGC
  CGGGCAGCGC CTGCTGGGAA CAGACTGTAC CCCAGGCTCT AGAGGACCTC CCCAAGCTTT
  TGCTGCGTTC CTAGAGTATG GTGCCCATAG TTCTGGGACC GAGTAGGCTA TGCTGGGGAG
  GGGTCACCTG GCGGGTTGGG CATACTTCAA CAGGCATTGG ACTAGTGGAA CATAGGTAAC
  W
  AGTGTCCTGT TTTAGTGTGT GGGGGGAGTA GGTGATCGAG TCAGGGCCCT GGTCACTTAG
  CTGCCACACA TTTCTCAAGC TCCCACACAG ACGTAGGAGA ACAGCGAGCC TCCCAGCGTG
  CCGGATAGCG GACTGCTTAG AGAACTCACT CCCCTCCCCA GGCCTCTAGA GGAAGGCTCT
  TACCCAACAT GCACCAGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385993104	MGP_WTSI_12_53704347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238389052					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385993104	MGP_WTSI_12_53704347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650143 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1038 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	1281 bp proximal
Gm23296	predicted gene, 23296	1125 bp downstream
Gm24859	predicted gene, 24859	428 bp upstream
Gm35239	predicted gene, 35239	1477 bp upstream
Gm59577	predicted gene, 59577	1065 bp downstream
Rr369517	regulatory region 369517	1324 bp upstream
Rr403283	regulatory region 403283	293 bp upstream
Rr403284	regulatory region 403284	1056 bp upstream
Rr466025	regulatory region 466025	1053 bp distal
Rr466026	regulatory region 466026	477 bp distal
Rr466027	regulatory region 466027	994 bp proximal
Rr466028	regulatory region 466028	1523 bp proximal
Tssr116285	transcription start site region 116285	1012 bp upstream
Tssr116286	transcription start site region 116286	989 bp upstream