rs238390423 SNP Detail

Summary

• ID
  rs238390423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105278147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCAATT TAAACCCTAG
  CCAATGATTT TCATTTGCTC TGAAACTCAT TCTAATTCTC CAAGGTCCAT ATATAACCCC
  TGGTTCACCC TGAATAAAGT GTATGCTTTC CACCCCATCC CCAACTCCAA ATAAAGCCAT
  GTGTACAAGC TAAAATTGCC TAAGAAGTAT TCCATCAAAG ACCATCAGAG AAGGCCTTCA
  Y
  CTAAAAGAGC TCTAACACTA AGATCCTTGG AGAAGGCCTT CTCTTCCCAT GCCCTCACTC
  CCAGCCAGAC CAGGATCCTA CAGAACTCCA CCCACTCTGA ACTCCCCTTG ATTTTTTTCC
  AGCCCAGTGT GCAAGTCTGG ACACCCTGAG GAGGATAAAT TGGAGCATAA GGACCACAGC
  TGGCCCCCTA GAACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366134821	MGP_WTSI_5_105559300	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238390423					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366134821	MGP_WTSI_5_105559300	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105278147 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1491 bp downstream
Tssr52267	transcription start site region 52267	1046 bp downstream
Tssr52268	transcription start site region 52268	1091 bp downstream
Tssr52269	transcription start site region 52269	1153 bp downstream
Tssr52270	transcription start site region 52270	1334 bp downstream
Tssr52271	transcription start site region 52271	1457 bp downstream
Tssr52272	transcription start site region 52272	1516 bp downstream
Tssr52273	transcription start site region 52273	1586 bp downstream
Tssr52274	transcription start site region 52274	1614 bp downstream
Tssr52275	transcription start site region 52275	1634 bp downstream
Tssr52276	transcription start site region 52276	1663 bp downstream
Tssr52277	transcription start site region 52277	1693 bp downstream
Tssr52278	transcription start site region 52278	1715 bp downstream
Tssr52279	transcription start site region 52279	1781 bp downstream
Tssr52280	transcription start site region 52280	1830 bp downstream
Tssr52281	transcription start site region 52281	1860 bp downstream
Tssr52282	transcription start site region 52282	1890 bp downstream
Tssr52283	transcription start site region 52283	1968 bp downstream