rs238391568 SNP Detail

Summary

• ID
  rs238391568
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52650223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGCTTC TTCTTCTTCT
  TTTTCTTTTT GCTCATAGTA GGATCAAAAA TCATCTCGTC CCCGGACATG GCTGTAGTCG
  AGCGGGTTCG GCAGGGATGA AAAGTCAAAC CGGTCGGCTT CACGGCCCGG AGTCAGCGTA
  GCTCCCACCG ATACTTCTCA CAGCACCGCA CTAGGCTCTT GCATCAGCGA AAGGGCGAAA
  A
  TATTCTTATA CTATTAGAAG ATATATTTAA CTGAAACACT AGGCAAGTAG ATAGAATTCA
  TAAGCAAGAA GTCAGTATTG TAGATAAACT AATTGAATCT CTAACTTGAT TCCAAAACAC
  TTCCTGTGAC AGAGGCCATT TTGAATTAAG GTTATTTTGA TGGCTTGGAC AGTATCACCT
  TCTTAATAAT GCAGACATTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ
ss374682825	MGP_WTSI_8_53282542	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ
rs238391568					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374682825	MGP_WTSI_8_53282542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52650223 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	132 bp upstream
Gm64848	predicted gene, 64848	within coordinates
Rr663484	regulatory region 663484	within coordinates
Tssr81291	transcription start site region 81291	290 bp upstream
Tssr81292	transcription start site region 81292	117 bp upstream
Tssr81293	transcription start site region 81293	44 bp upstream
Tssr81294	transcription start site region 81294	within coordinates