rs238393112 SNP Detail

Summary

• ID
  rs238393112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTGCC AGCCCTTAGT
  GCATTCAGGC TTAGGCTCCC AGGCAGGGAC ACTACCCCCG CGCCTCTGGA GGACATGCTA
  TCCTCTCACT CTGTCCACTG GTATCTCAAC ACCCCCATCT GCCCAGTAAA GGTCTTTCTG
  CAGCAGTTCA GCCTACTTGG AATTTTCTCA ATGGTAGCTC CCTTGCGAGG TGGGGGACTG
  Y
  GGCTGGAGAC AAGGGAGGGT GAAGGAAGGG AGGGAGGTAC ACAGGGTGGA CCTCTGCAGT
  CCACACTGCA GCCCTGCTCA GCTTCTAGAA TCTGTGACCC AGTTCCCATC GGCTGGTCCT
  CACCCACCTT CCCCAGGGCA TTGAGGGCTG AGAGAGGGTG TCGTTTCTGA AGGATGGCAA
  CTAAAGCTTA CCCAAGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428919	MGP_WTSI_11_54723935	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238393112					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428919	MGP_WTSI_11_54723935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801259 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	46 bp downstream
Tnip1	TNFAIP3 interacting protein 1	352 bp downstream
Tssr3502	transcription start site region 3502	789 bp upstream
Tssr3503	transcription start site region 3503	317 bp downstream
Tssr101561	transcription start site region 101561	1876 bp downstream
Tssr101562	transcription start site region 101562	1829 bp downstream
Tssr101563	transcription start site region 101563	1817 bp downstream
Tssr101564	transcription start site region 101564	1796 bp downstream
Tssr101565	transcription start site region 101565	1366 bp downstream
Tssr101566	transcription start site region 101566	1320 bp downstream
Tssr101567	transcription start site region 101567	957 bp downstream
Tssr101568	transcription start site region 101568	883 bp downstream
Tssr101569	transcription start site region 101569	800 bp downstream
Tssr101570	transcription start site region 101570	749 bp downstream
Tssr101571	transcription start site region 101571	673 bp downstream
Tssr101572	transcription start site region 101572	629 bp downstream
Tssr101573	transcription start site region 101573	602 bp downstream
Tssr101574	transcription start site region 101574	577 bp downstream
Tssr101575	transcription start site region 101575	530 bp downstream
Tssr101576	transcription start site region 101576	509 bp downstream
Tssr101577	transcription start site region 101577	487 bp downstream
Tssr101578	transcription start site region 101578	402 bp downstream
Tssr108007	transcription start site region 108007	1859 bp upstream
Tssr108008	transcription start site region 108008	1798 bp upstream
Tssr108009	transcription start site region 108009	1782 bp upstream
Tssr108010	transcription start site region 108010	1362 bp upstream
Tssr108011	transcription start site region 108011	746 bp upstream
Tssr108012	transcription start site region 108012	665 bp upstream
Tssr108013	transcription start site region 108013	645 bp upstream
Tssr108014	transcription start site region 108014	630 bp upstream
Tssr108015	transcription start site region 108015	549 bp upstream
Tssr108016	transcription start site region 108016	487 bp upstream
Tssr108017	transcription start site region 108017	446 bp upstream
Tssr108018	transcription start site region 108018	425 bp upstream
Tssr108019	transcription start site region 108019	356 bp upstream
Tssr108020	transcription start site region 108020	337 bp upstream
Tssr108021	transcription start site region 108021	320 bp upstream
Tssr108022	transcription start site region 108022	277 bp upstream
Tssr108023	transcription start site region 108023	53 bp upstream