rs238394764 SNP Detail

Summary

• ID
  rs238394764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59522211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGCAAC ATTAACAGGA
  GTACAACTAG ATACAGGATG GCCGGTCTGG GAGAGCGCGT AGCCCAGGAC TGCTTCGCAG
  TGTGCTCTTC GTGAGCCGGA CACCCCATCT CTGGGCCATT GAGAGCCCCA CTGACTCCTT
  TCATTCTCCT GCAGTTAAAA GTGGCATCTG GGTTTCCAAC AACTCACCTG AAAGCCCCCC
  Y
  CCGCCCCCCC CCCCCCCCAA CGTGAGCGCC CCACCTCTCC GTTTGCTGCT GCCACCTACT
  GTCCACTCTC GTGAAATCTC TGATGCGTGG TCAAGCACAG AGAGAAACTC TTTCTTCTTG
  GTGGATGAGA ACAGTTTTGG GAGAGAAACG GATGGGGCGG GAGGAGAAGG CAGCAGATAT
  ATATTTTTTT CCCAAGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	FVB/NJ	JF1/MsJ	LG/J	QSi5/Ianm	SM/J
ss394214980	MGP_WTSI_15_59481917	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	FVB/NJ	JF1/MsJ	LG/J	QSi5/Ianm	SM/J
rs238394764					SNP	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214980	MGP_WTSI_15_59481917	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59522211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	517 bp distal
Gm56697	predicted gene, 56697	740 bp upstream
Rr311787	regulatory region 311787	within coordinates
Rr390806	regulatory region 390806	1055 bp upstream
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	85 bp upstream
Tssr131385	transcription start site region 131385	1993 bp downstream
Tssr131386	transcription start site region 131386	1931 bp downstream
Tssr131387	transcription start site region 131387	1825 bp downstream
Tssr131388	transcription start site region 131388	1801 bp downstream
Tssr131389	transcription start site region 131389	1773 bp downstream
Tssr131390	transcription start site region 131390	1675 bp downstream
Tssr131391	transcription start site region 131391	1657 bp downstream
Tssr131392	transcription start site region 131392	362 bp upstream
Tssr134446	transcription start site region 134446	241 bp downstream