rs238398334 SNP Detail

Summary

• ID
  rs238398334
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41723741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATGAAT GGCCATTAAT
  ACCACAGAAT GCCCACTTAG CATCTCACAG ACTTGATTGA GAACTAACCT TAAACACGAG
  GCCATAGAAA CCATCCTAGG AACAGGGCAT ATAGAAATGT TTCATTACCT CGGTCTTCTT
  GTACTGACAA GCTGCAGGGA TCAGAGGACA GAAGAGTAGC CACGTGTTAA GTGTTATGGC
  M
  CACCTGAGTG ACCTGAAAAT CCCAATGACT TTGTCAGAGC TTGGAGACCC AGCCAATAAT
  CCCTAAATAG TGTGAGGACT TATTACCCCT TCCACTTTAC AACCACAAGT CAATTTGTGG
  GCCAAGACAT CTCAGGAGCA TAGTGTGACA CTCTTTGGGA TTTTGAGAAG TAACTGGGAG
  GTCTTCGAGA TATCCTGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388393662	MGP_WTSI_13_41665634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238398334					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388393662	MGP_WTSI_13_41665634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41723741 () rs orientation: forward

Symbol	Name	Function Class
Gm32184	predicted gene, 32184	within coordinates
Rr403725	regulatory region 403725	1862 bp upstream
Rr478020	regulatory region 478020	888 bp distal
Rr478021	regulatory region 478021	1119 bp proximal
Rr478022	regulatory region 478022	1277 bp proximal
Rr478023	regulatory region 478023	1913 bp proximal
Rr478024	regulatory region 478024	1987 bp proximal
Tssr4053	transcription start site region 4053	1225 bp upstream
Tssr4054	transcription start site region 4054	929 bp downstream
Tssr4055	transcription start site region 4055	685 bp downstream
Tssr119410	transcription start site region 119410	972 bp downstream
Tssr119411	transcription start site region 119411	960 bp downstream