rs238403014 SNP Detail

Summary

• ID
  rs238403014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60940692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGCCCC ACTTCTCCTT
  TTCAGGTATA AATCCGGCTT TTGCTGTCCC CTACCGCACT TCCTTCCCTT TTCTCTTTAA
  ACCTGACGTC ACCGTGGGGA TTGGGGACGG CACAGTGGAT GAAAACCCTT CTTCCTCTTA
  CATAGTAAAC TCACCTATCT TTTTCTGCCA GCAAAAACAA GATCAAATCC CCCTCCCCAC
  Y
  TCCGAGGGGG GCTTAGCTCC TCAGATCTCC AGGGTAGAGG GGACTCGGGA CTCGGGAGGA
  CTTTACCCTG TCACTACACA GAGGAGACAC CAAAGCCCAG AGGAGGCAAG GAACGTGGCT
  CATCCTTCCC ATTGAGCTTG GGCCCCAGGT GGATCTTCCT GGGAAGGACA CTTGGGGGCG
  GCAGGAGCAG ATGTCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400867903	MGP_WTSI_18_60967274	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238403014					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400867903	MGP_WTSI_18_60967274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60940692 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1055 bp proximal
Rr405671	regulatory region 405671	1663 bp downstream
Rr405672	regulatory region 405672	807 bp downstream
Tssr5344	transcription start site region 5344	51 bp upstream
Tssr151330	transcription start site region 151330	1652 bp downstream
Tssr151331	transcription start site region 151331	1633 bp downstream
Tssr151332	transcription start site region 151332	596 bp downstream
Tssr151333	transcription start site region 151333	42 bp downstream
Tssr151334	transcription start site region 151334	279 bp upstream
Tssr151335	transcription start site region 151335	288 bp upstream
Tssr151336	transcription start site region 151336	322 bp upstream
Tssr151337	transcription start site region 151337	376 bp upstream
Tssr151338	transcription start site region 151338	432 bp upstream
Tssr151339	transcription start site region 151339	611 bp upstream
Tssr151340	transcription start site region 151340	1287 bp upstream
Tssr151341	transcription start site region 151341	1310 bp upstream
Tssr151342	transcription start site region 151342	1342 bp upstream
Tssr151343	transcription start site region 151343	1402 bp upstream
Tssr153493	transcription start site region 153493	435 bp downstream
Tssr153494	transcription start site region 153494	457 bp downstream
Tssr153495	transcription start site region 153495	673 bp downstream