rs238404351 SNP Detail

Summary

• ID
  rs238404351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115950499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTTACTC CGGTGTTCTT
  TGTGTGGATT TCTTGTTTTG TTATTGGGTT TTTGGTTTTG TTTGTTTGTT TATTTTTATT
  TGTTTAGTTA GTTAGTTAGT TAGTTAGTTA GTTAGTTTGG TTTTTCGAGA CAGGGTTTCT
  CTGTGTAGCC CTCGCTGTCC TGGAACTCAC CTTGTAGACC AGGCTGGCCT CGAACTCAGA
  R
  ATCCGCCTGC CTCTGCCTCC TGAGTGCTGG GATTAAAGGC ATTTATTTGT CACTTTATAC
  AGCAAACGCT GTGATGTATT TGATTGCCCC ATGAGCTGTT AGCTTGTCGG TTGGCTGGGA
  CTGTGTGCTG ACTATCAGAA TTTTCACTAA GCCCCCTCCT CACTAGCTAT TATTTATTTA
  TTCATTCATT CATTCATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381885439	MGP_WTSI_10_115551650	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238404351					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381885439	MGP_WTSI_10_115551650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115950499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2211	CpG island 2211	189 bp distal
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Taf7l2	Taf7l2	1002 bp upstream
Tssr99340	transcription start site region 99340	714 bp upstream
Tssr99341	transcription start site region 99341	661 bp upstream
Tssr99342	transcription start site region 99342	653 bp upstream
Tssr99343	transcription start site region 99343	645 bp upstream
Tssr99344	transcription start site region 99344	637 bp upstream
Tssr99345	transcription start site region 99345	331 bp upstream
Tssr99346	transcription start site region 99346	315 bp upstream
Tssr99347	transcription start site region 99347	295 bp upstream