rs238406275 SNP Detail

Summary

• ID
  rs238406275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18914549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTATAC ATACATACAT
  ACATGCATAC ATACATACAT ACGGTGCATG GGGGTTCACA GCTCTGATCC CAGGACTTGG
  TAAGTGGAGA GAAGATCACG GGTTCAAGGT CGTCCTTGGC TGTTTACAGT TTGAAGACAA
  CCTAGCTACT TGAGACTCTG TCTTAAGAGA CAGAGACAAA CACAGACAAG AAGACAGAGC
  Y
  AGTCCAGTAC TAAGTTAGAA AGAGGGTGTG GGTGTGTGCA GTGGTGGACG TGGTCAAGTA
  TCTAGAGGCA GGGCTCAATG TGTAAGGGTG GAACTATACT GACGTAGAAG GAGCAAGGAC
  TTAAGAGTAG GCTATAGTAA GTCTAAAGAC AAAACCCAAG TCTCCTGAAA TAATAAAATC
  ACATTCTCAG TCAGATGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743492	MGP_WTSI_7_19765973	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	C	T	C	C	T	C	T	C	T	C	T	T	C	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238406275					SNP	C	C	C	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	C	T	C	C	T	C	T	C	T	C	T	T	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743492	MGP_WTSI_7_19765973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18914549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18452	CpG island 18452	693 bp distal
Cpgi18453	CpG island 18453	452 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	841 bp upstream
Rr643019	regulatory region 643019	1286 bp distal
Rr643020	regulatory region 643020	107 bp proximal
Rr643021	regulatory region 643021	591 bp proximal
Tssr64796	transcription start site region 64796	1587 bp downstream
Tssr64797	transcription start site region 64797	538 bp upstream
Tssr64798	transcription start site region 64798	587 bp upstream
Tssr64799	transcription start site region 64799	669 bp upstream
Tssr64800	transcription start site region 64800	783 bp upstream