rs238407143 SNP Detail

Summary

• ID
  rs238407143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGAGAAA GCACAAGCCT
  GTGGTTCCAG CACTAGGGAA GGACAGTGGA AGATTCCTGG GGCTTACTGG CCAGCCAGTT
  TAGCTAGATT GGCAAGCTCC AGTTTCAGTG AAAAACCCTG TTTCAAATAA AAAATAGAGT
  TGGAAAGTGA CCAAGGAAGA CAGGCATTGA CCTCTGGTCT ACACTTCTTA TGTGTGCACA
  Y
  GAGCACATAC ATATACACAC ATTCATAAGA TAAAAATAAA GTCACAAAAA AGAGGAGTGG
  TTGGGACTGT CCATAAAGCC CTCCCACCTC CACCTTTATT TTCACACAAA CAAAGATACA
  CACAGCCAAG TGGTTGGTGG CACACGCCTT CAATCCCTGC ACTGGGGAAG CAGAAGCAGA
  TGATCTCTGA GTTTGAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382290393	MGP_WTSI_11_5967713	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238407143					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382290393	MGP_WTSI_11_5967713	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017710 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	1348 bp upstream
Cpgi2551	CpG island 2551	1193 bp distal
Cpgi2552	CpG island 2552	561 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442231	regulatory region 442231	1472 bp distal
Rr442232	regulatory region 442232	325 bp proximal
Rr442233	regulatory region 442233	820 bp proximal
Rr442234	regulatory region 442234	1342 bp proximal
Tssr106685	transcription start site region 106685	1982 bp upstream
Tssr106686	transcription start site region 106686	1955 bp upstream
Tssr106687	transcription start site region 106687	1931 bp upstream
Tssr106688	transcription start site region 106688	1799 bp upstream
Tssr106689	transcription start site region 106689	1590 bp upstream
Tssr106690	transcription start site region 106690	1573 bp upstream
Tssr106691	transcription start site region 106691	1345 bp upstream
Tssr106692	transcription start site region 106692	1326 bp upstream
Tssr106693	transcription start site region 106693	1299 bp upstream