rs238413739 SNP Detail

Summary

• ID
  rs238413739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127128542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAGGGT GTGTACGTGT
  GTGCTCTCTA ACTTCGGAGG CTTGCAATGT GATCAGAAAA ACAGCCCATT ATTCAAGATT
  CAGGTAGATA GATTTACCAT GTGGATGAGT TCAGATAACT TAGAAGTAGA CCCCTAAATG
  AGGAACAAGG AAAGGCTTAT TTGAGAAAAT TGCAACCTCG CCAAACCAGG GATAAAGGTT
  R
  TGCCCCTCAA GCTTAGACTC CTGATAACTT TCAAGCTGTT GTCCGCCCCG AGCCACGTGC
  GTGGAGAGGA AGAGGAGGAA GGGGTGGATG TTGGAGAAAG GGGTGCTTCT TAAGCCTAGT
  AGAATATGAC CCTCCTGCAG AAACCTTTCT GTTCTTGGGG GCGCCATTGG GCAACGCGGC
  CAGCCTCTCA GAGCGGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369997151	MGP_WTSI_6_127101597	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238413739					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369997151	MGP_WTSI_6_127101597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127128542 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18034	CpG island 18034	499 bp distal
Cpgi18035	CpG island 18035	56 bp proximal
Cpgi18036	CpG island 18036	1181 bp proximal
Cpgi18037	CpG island 18037	1700 bp proximal
Gm56941	predicted gene, 56941	1464 bp downstream
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	858 bp upstream
Tssr59021	transcription start site region 59021	1336 bp downstream
Tssr59022	transcription start site region 59022	990 bp upstream
Tssr59023	transcription start site region 59023	1680 bp upstream
Tssr63371	transcription start site region 63371	1952 bp upstream
Tssr63372	transcription start site region 63372	1929 bp upstream
Tssr63373	transcription start site region 63373	1916 bp upstream
Tssr63374	transcription start site region 63374	903 bp upstream
Tssr63375	transcription start site region 63375	565 bp upstream
Tssr63376	transcription start site region 63376	540 bp upstream
Tssr63377	transcription start site region 63377	524 bp upstream
Tssr63378	transcription start site region 63378	879 bp downstream