rs238416741 SNP Detail

Summary

• ID
  rs238416741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117112323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATTTCT GACTGTTCAG
  TTTCTTAAGA TCTTTGGAAG CTCTTAGCTA TGGTGGCTGC TGGGACTTTT GCAAAGGCTG
  TCATTCCTCT AGGCTCAGAG GGAAGCTCAG TTAACCAGCA GGTGCTCTGA ATTTGAATGA
  AAAAGCAAAG GGAACTGAAT TGAGGCCACT CTTGGAGAGC AAATGACAGG CACAAAATGC
  R
  CTGTTTGTAC TGGTTCTGAT GGTGAGATAG GAGATGGAAA TACAGATACC ATACAGAATC
  CCACAAACAT TATATATATA TATTGCATAT TGCATATATG GGATATATAT ATATATGTAT
  ATATATATAT CACATATGGG ATATATATAT ATATATATGT ATATATATAT ATATATATAT
  ATATATATAT ATATATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381913448	MGP_WTSI_10_116713474	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238416741					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381913448	MGP_WTSI_10_116713474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117112323 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	1123 bp downstream
Rr439488	regulatory region 439488	520 bp distal
Tssr95904	transcription start site region 95904	911 bp upstream
Tssr95905	transcription start site region 95905	967 bp upstream
Tssr95906	transcription start site region 95906	1029 bp upstream
Tssr95907	transcription start site region 95907	1046 bp upstream
Tssr95908	transcription start site region 95908	1222 bp upstream
Tssr95909	transcription start site region 95909	1298 bp upstream
Tssr95910	transcription start site region 95910	1433 bp upstream
Tssr95911	transcription start site region 95911	1563 bp upstream
Tssr95912	transcription start site region 95912	1658 bp upstream
Tssr95913	transcription start site region 95913	1718 bp upstream
Tssr99410	transcription start site region 99410	1012 bp downstream
Tssr99411	transcription start site region 99411	1064 bp downstream
Tssr99412	transcription start site region 99412	1185 bp downstream
Tssr99413	transcription start site region 99413	1246 bp downstream
Tssr99414	transcription start site region 99414	1335 bp downstream
Tssr99415	transcription start site region 99415	1418 bp downstream
Tssr99416	transcription start site region 99416	1468 bp downstream
Tssr99417	transcription start site region 99417	1580 bp downstream
Tssr99418	transcription start site region 99418	1594 bp downstream
Tssr99419	transcription start site region 99419	1609 bp downstream
Tssr99420	transcription start site region 99420	1681 bp downstream
Tssr99421	transcription start site region 99421	1755 bp downstream