rs238417459 SNP Detail

Summary

• ID
  rs238417459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135106545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTCAGCT AAGTTATATA
  ACTTAAGTAC CATGGAACGT TCTTGACATA AAGTTCACAA AGTGGTGTTC TATTAGTAGC
  CCAGGCTGGC CCTAAACTCC AGGTCTTCCT GCCTAAGCCT CCTTTGTGCT GGGATTACAA
  GTCAATGGCT TTATACCCAG TCAATGCCAT AATCTCTCTC TCATCTCCCT CTCCCCCTCC
  Y
  CCTCTCCCCC TCTCCCCCTC CCTCTCCAGC TCTCCTCCCC TCCCTCCTTC CCTCCCTCCT
  CTTCTCTCCT CTCTTCCAAC ATTACCCCTG TTTCATCTCC CCAACCATAC CAAGAGCGCT
  GCTTGAACGC TCTGCACCTC AGTGTTTGTT CCCCCGATGC CCCTGACAGA TAGGAGCCCA
  GAGAACTCTC TGTAGGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss351535241	MGP_WTSI_1_137075384	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs238417459					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351535241	MGP_WTSI_1_137075384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135106545 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	62 bp proximal
Rr419095	regulatory region 419095	1855 bp proximal